C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAN binding protein 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040594 Ranbp17 10090 - 11:33211795-33513746 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037522 Ranbp17-003 33472416-33513630 protein_coding
  ENSMUST00000102815 Ranbp17-001 33211795-33513746 protein_coding
  ENSMUST00000129179 Ranbp17-002 33296394-33513642 nonsense_mediated_decay
  ENSMUST00000147751 Ranbp17-005 33486033-33513094 protein_coding
  ENSMUST00000154808 Ranbp17-004 33302767-33330015 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037522ENSMUST00000102815ENSMUST00000129179ENSMUST00000147751
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037522 0.324±0.00 N/A 0.154±0.00 0.962±0.34 0.095±0.01 0.070±0.00 0.042±0.01 N/A 0.504±0.21 N/A 0.025±0.02 0.842±0.15 0.369±0.08 N/A
ENSMUST00000102815 0.314±0.04 0.539±0.10 0.368±0.08 2.221±1.23 0.217±0.07 0.208±0.13 0.046±0.01 0.109±0.03 0.525±0.55 0.444±0.00 0.034±0.02 0.603±0.16 0.806±0.22 6.024±1.99
ENSMUST00000129179 N/A N/A N/A N/A N/A N/A N/A N/A 0.161±0.16 N/A 0.010±0.00 N/A 0.417±0.11 N/A
ENSMUST00000147751 N/A N/A N/A N/A N/A 0.178±0.00 0.164±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00092S CIL_00092S_0002 VISTA 11:32891798-33493112
CIL_00097F CIL_00097F_0002 VISTA 11:32999598-33601607
CIL_00088M CIL_00088M_0002 VISTA 11:33042866-33643782
CIL_000977 CIL_000977_0002 VISTA 11:33092412-33693558
CIL_00098H CIL_00098H_0002 VISTA 11:33099828-33701076
CIL_0008SG CIL_0008SG_0002 VISTA 11:33129906-33731024
CIL_0007NP CIL_0007NP_0002 UCNEbase 11:33192157-33430428

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005643 IEA nuclear pore
GO:0005737 IEA cytoplasm
GO:0006886 IEA intracellular protein transport
GO:0006913 TAS nucleocytoplasmic transport
GO:0008536 TAS Ran GTPase binding
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000204764 RANBP17 RAN binding protein 17 protein_coding Homo_sapiens

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