C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAN binding protein 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204764 RANBP17 9606 + 5:170861870-171300015 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000389118 RANBP17-005 170861932-171298858 nonsense_mediated_decay
  ENST00000443155 RANBP17-006 170861870-170911409 retained_intron
  ENST00000517629 RANBP17-021 170924356-170924918 processed_transcript
  ENST00000518492 RANBP17-015 170968256-171029200 nonsense_mediated_decay
  ENST00000519130 RANBP17-004 170862023-170911342 retained_intron
  ENST00000519256 RANBP17-002 170862018-171243064 nonsense_mediated_decay
  ENST00000519944 RANBP17-011 170863486-170892490 protein_coding
  ENST00000519949 RANBP17-009 170862018-171300015 nonsense_mediated_decay
  ENST00000520586 RANBP17-016 171143272-171205607 processed_transcript
  ENST00000520864 RANBP17-003 170862035-171207903 nonsense_mediated_decay
  ENST00000520879 RANBP17-013 170918171-170953668 processed_transcript
  ENST00000521165 RANBP17-014 170953621-170968506 retained_intron
  ENST00000521759 RANBP17-010 171143267-171299177 processed_transcript
  ENST00000521834 RANBP17-019 171241033-171271619 processed_transcript
  ENST00000522066 RANBP17-008 170862018-171300015 nonsense_mediated_decay
  ENST00000522380 RANBP17-022 170919451-170970658 processed_transcript
  ENST00000522533 RANBP17-007 170862018-171300015 nonsense_mediated_decay
  ENST00000522734 RANBP17-012 170911028-170924407 protein_coding
  ENST00000523189 RANBP17-001 170861870-171300015 protein_coding
  ENST00000523665 RANBP17-017 171143312-171205579 processed_transcript
  ENST00000523727 RANBP17-020 170881839-170896238 retained_intron
  ENST00000524364 RANBP17-018 171143321-171213682 processed_transcript
  ENST00000616486 RANBP17-201 171170130-171298858 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389118ENST00000443155ENST00000519130ENST00000519256ENST00000519944ENST00000519949ENST00000520586ENST00000520864ENST00000520879ENST00000521165ENST00000521759ENST00000522066ENST00000522380ENST00000522533ENST00000523189ENST00000523665ENST00000523727ENST00000524364ENST00000616486
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389118 N/A 0.119±0.00 N/A 0.111±0.00 0.101±0.00 N/A N/A N/A N/A N/A N/A 0.189±0.00 0.205±0.00 0.899±0.00
ENST00000443155 N/A N/A 0.642±0.00 0.208±0.00 N/A N/A N/A N/A N/A 4.700±0.00 N/A N/A 0.193±0.00 N/A
ENST00000519130 N/A N/A 0.336±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519256 0.057±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.119±0.00 N/A N/A
ENST00000519944 0.552±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.094±0.00 N/A N/A
ENST00000520586 N/A N/A N/A N/A N/A N/A 1.689±0.00 1.200±0.00 5.918±0.00 N/A N/A N/A N/A N/A
ENST00000520864 N/A N/A N/A N/A 0.546±0.00 1.080±0.00 N/A N/A 0.396±0.00 N/A N/A 0.426±0.00 N/A N/A
ENST00000520879 N/A N/A N/A 4.509±0.00 N/A 4.719±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.049±0.00 N/A N/A
ENST00000521759 N/A 0.299±0.00 N/A 0.162±0.00 0.218±0.00 0.063±0.00 0.059±0.00 0.288±0.00 0.067±0.00 0.300±0.00 N/A 0.373±0.00 0.344±0.19 2.981±0.46
ENST00000522066 N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A N/A 0.102±0.00 N/A N/A 0.245±0.00 1.496±0.77
ENST00000522380 0.267±0.00 0.572±0.00 N/A N/A 1.537±1.20 0.205±0.00 0.200±0.00 0.214±0.00 N/A 0.231±0.00 0.129±0.00 0.651±0.00 N/A 6.315±0.00
ENST00000522533 N/A 0.193±0.00 N/A N/A N/A N/A 0.036±0.00 N/A 0.020±0.00 N/A N/A N/A N/A N/A
ENST00000523189 0.056±0.00 N/A N/A N/A 0.076±0.00 0.028±0.00 N/A N/A N/A N/A N/A 0.118±0.00 0.232±0.06 N/A
ENST00000523665 N/A N/A N/A N/A N/A N/A 2.958±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000523727 N/A N/A N/A N/A N/A N/A N/A 0.443±0.00 N/A N/A N/A N/A N/A N/A
ENST00000524364 N/A N/A N/A 4.602±0.00 2.130±0.00 3.607±0.00 0.131±0.00 N/A N/A 5.552±0.00 0.304±0.20 N/A N/A N/A
ENST00000616486 0.147±0.00 N/A N/A 1.156±0.00 N/A N/A 1.078±0.00 0.413±0.00 N/A N/A N/A 0.842±0.42 0.286±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SG CIL_0008SG_0001 VISTA 5:170690333-171291455
CIL_00098H CIL_00098H_0001 VISTA 5:170731788-171333093
CIL_000977 CIL_000977_0001 VISTA 5:170744249-171345366
CIL_00088M CIL_00088M_0001 VISTA 5:170856489-171457417

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005525 NAS GTP binding
GO:0005634 IEA nucleus
GO:0005643 NAS nuclear pore
GO:0005737 IEA cytoplasm
GO:0006606 NAS protein import into nucleus
GO:0006886 IEA intracellular protein transport
GO:0008536 IEA Ran GTPase binding
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000040594 Ranbp17 RAN binding protein 17 protein_coding Mus_musculus

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