C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAN binding protein 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037522 Ranbp17-003 ENSMUSG00000040594 10090 - 11:33472416-33513630 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverMuscleOvaryPlacentaENSMUST00000037522
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Muscle Ovary Placenta
ENSMUST00000037522 0.324±0.00 0.154±0.00 0.962±0.34 0.095±0.01 0.070±0.00 0.042±0.01 0.504±0.21 0.025±0.02 0.842±0.15 0.369±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00092S CIL_00092S_0002 VISTA 11:32891798-33493112
CIL_00097F CIL_00097F_0002 VISTA 11:32999598-33601607
CIL_00088M CIL_00088M_0002 VISTA 11:33042866-33643782
CIL_000977 CIL_000977_0002 VISTA 11:33092412-33693558
CIL_00098H CIL_00098H_0002 VISTA 11:33099828-33701076
CIL_0008SG CIL_0008SG_0002 VISTA 11:33129906-33731024
CIL_0007NP CIL_0007NP_0002 UCNEbase 11:33192157-33430428

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006886 IEA intracellular protein transport
GO:0006913 TAS nucleocytoplasmic transport
GO:0008536 TAS Ran GTPase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389118 RANBP17-005 nonsense_mediated_decay Homo_sapiens 0 1808
ENST00000443155 RANBP17-006 retained_intron Homo_sapiens 0 985
ENST00000519130 RANBP17-004 retained_intron Homo_sapiens 0 782
ENST00000519256 RANBP17-002 nonsense_mediated_decay Homo_sapiens 0 1808
ENST00000519944 RANBP17-011 protein_coding Homo_sapiens 0 475
ENST00000519949 RANBP17-009 nonsense_mediated_decay Homo_sapiens 0 1808
ENST00000520864 RANBP17-003 nonsense_mediated_decay Homo_sapiens 0 1144
ENST00000520879 RANBP17-013 processed_transcript Homo_sapiens 0 573
ENST00000522066 RANBP17-008 nonsense_mediated_decay Homo_sapiens 0 1808
ENST00000522533 RANBP17-007 nonsense_mediated_decay Homo_sapiens 0 1808
ENST00000522734 RANBP17-012 protein_coding Homo_sapiens 0 385
ENST00000523189 RANBP17-001 protein_coding Homo_sapiens 0 1808

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