C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAN binding protein 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102815 Ranbp17-001 ENSMUSG00000040594 10090 - 11:33211795-33513746 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102815
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102815 0.314±0.04 0.539±0.10 0.368±0.08 2.221±1.23 0.217±0.07 0.208±0.13 0.046±0.01 0.109±0.03 0.525±0.55 0.444±0.00 0.034±0.02 0.603±0.16 0.806±0.22 6.024±1.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00092S CIL_00092S_0002 VISTA 11:32891798-33493112
CIL_00097F CIL_00097F_0002 VISTA 11:32999598-33601607
CIL_00088M CIL_00088M_0002 VISTA 11:33042866-33643782
CIL_000977 CIL_000977_0002 VISTA 11:33092412-33693558
CIL_00098H CIL_00098H_0002 VISTA 11:33099828-33701076
CIL_0008SG CIL_0008SG_0002 VISTA 11:33129906-33731024
CIL_0007NP CIL_0007NP_0002 UCNEbase 11:33192157-33430428

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005643 IEA nuclear pore
GO:0005737 IEA cytoplasm
GO:0006886 IEA intracellular protein transport
GO:0006913 TAS nucleocytoplasmic transport
GO:0008536 TAS Ran GTPase binding
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389118 RANBP17-005 nonsense_mediated_decay Homo_sapiens 0 2145
ENST00000443155 RANBP17-006 retained_intron Homo_sapiens 0 1000
ENST00000518492 RANBP17-015 nonsense_mediated_decay Homo_sapiens 1e-37 159
ENST00000519130 RANBP17-004 retained_intron Homo_sapiens 0 782
ENST00000519256 RANBP17-002 nonsense_mediated_decay Homo_sapiens 0 2134
ENST00000519944 RANBP17-011 protein_coding Homo_sapiens 0 475
ENST00000519949 RANBP17-009 nonsense_mediated_decay Homo_sapiens 0 2193
ENST00000520586 RANBP17-016 processed_transcript Homo_sapiens 0 483
ENST00000520864 RANBP17-003 nonsense_mediated_decay Homo_sapiens 0 1465
ENST00000520879 RANBP17-013 processed_transcript Homo_sapiens 0 664
ENST00000521165 RANBP17-014 retained_intron Homo_sapiens 0 298
ENST00000521759 RANBP17-010 processed_transcript Homo_sapiens 0 1899
ENST00000521834 RANBP17-019 processed_transcript Homo_sapiens 0 604
ENST00000522066 RANBP17-008 nonsense_mediated_decay Homo_sapiens 0 2191
ENST00000522380 RANBP17-022 processed_transcript Homo_sapiens 0 701
ENST00000522533 RANBP17-007 nonsense_mediated_decay Homo_sapiens 0 2191
ENST00000522734 RANBP17-012 protein_coding Homo_sapiens 0 385
ENST00000523189 RANBP17-001 protein_coding Homo_sapiens 0 4331
ENST00000523665 RANBP17-017 processed_transcript Homo_sapiens 0 375
ENST00000524364 RANBP17-018 processed_transcript Homo_sapiens 0 769
ENST00000616486 RANBP17-201 protein_coding Homo_sapiens 0 2056

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