C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sidekick homolog 2 (chicken)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041592 Sdk2 10090 - 11:113776374-114067046 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041627 Sdk2-001 113776374-114066218 protein_coding
  ENSMUST00000125879 Sdk2-005 113806341-113826219 processed_transcript
  ENSMUST00000141943 Sdk2-003 113848562-114065975 protein_coding
  ENSMUST00000144301 Sdk2-004 113941423-114067029 processed_transcript
  ENSMUST00000155651 Sdk2-002 113865600-114067046 processed_transcript
  ENSMUST00000156955 Sdk2-006 113793839-113810423 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041627ENSMUST00000125879ENSMUST00000141943ENSMUST00000144301ENSMUST00000155651ENSMUST00000156955
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041627 0.374±0.05 0.149±0.06 1.888±1.26 0.129±0.08 0.259±0.10 0.103±0.04 0.076±0.02 0.045±0.03 0.165±0.05 0.033±0.01 0.250±0.15 1.489±1.60 1.010±0.74
ENSMUST00000125879 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.239±0.00 4.606±0.00
ENSMUST00000141943 N/A N/A N/A N/A N/A 0.098±0.00 N/A N/A N/A N/A 0.333±0.00 N/A N/A
ENSMUST00000144301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.405±0.00 N/A N/A
ENSMUST00000155651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.189±0.00 N/A N/A
ENSMUST00000156955 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.144±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R4 CIL_0007R4_0002 VISTA 11:113433041-114034346
CIL_0008QM CIL_0008QM_0002 VISTA 11:113678008-114283381
CIL_0003AC CIL_0003AC_0003 CGP 11:113726850-114067046
CIL_00073F CIL_00073F_0002 CGP 11:113776374-114672331

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0007155 IEA cell adhesion
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060452 sdk2b sidekick homolog 2b (chicken) protein_coding Danio_rerio
ENSDARG00000078116 SDK2 (2 of 2) sidekick cell adhesion molecule 2 protein_coding Danio_rerio
ENSG00000069188 SDK2 sidekick cell adhesion molecule 2 protein_coding Homo_sapiens

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