C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sidekick cell adhesion molecule 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000069188 SDK2 9606 - 17:73334384-73644089 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000392650 SDK2-002 73334384-73644089 protein_coding
  ENST00000410094 SDK2-006 73338443-73369213 processed_transcript
  ENST00000424778 SDK2-004 73337939-73414655 protein_coding
  ENST00000479356 SDK2-001 73357370-73437769 retained_intron
  ENST00000585283 SDK2-007 73504340-73507594 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000392650ENST00000410094ENST00000424778ENST00000479356ENST00000585283
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000392650 N/A 0.094±0.00 0.042±0.00 0.271±0.12 N/A N/A N/A 0.046±0.00 N/A N/A N/A 1.039±0.31
ENST00000410094 N/A N/A N/A N/A 0.283±0.00 N/A N/A 0.142±0.00 N/A 0.330±0.00 0.411±0.00 N/A
ENST00000424778 0.051±0.00 N/A N/A N/A N/A 0.254±0.00 0.187±0.00 N/A 0.194±0.13 0.241±0.06 0.542±0.00 10.741±0.12
ENST00000479356 N/A N/A N/A N/A N/A N/A 0.068±0.00 N/A 0.074±0.00 N/A 0.220±0.00 8.280±0.00
ENST00000585283 N/A N/A N/A N/A N/A N/A N/A 0.443±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R4 CIL_0007R4_0001 VISTA 17:72990906-73592358
CIL_0008QM CIL_0008QM_0001 VISTA 17:73240460-73843108
CIL_0003AC CIL_0003AC_0002 CGP 17:73283624-73644089
CIL_00073F CIL_00073F_0001 CGP 17:73334384-74210655

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0007155 IEA cell adhesion
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060452 sdk2b sidekick homolog 2b (chicken) protein_coding Danio_rerio
ENSDARG00000078116 SDK2 (2 of 2) sidekick cell adhesion molecule 2 protein_coding Danio_rerio
ENSMUSG00000041592 Sdk2 sidekick homolog 2 (chicken) protein_coding Mus_musculus

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