C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003AC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000045036-ENSDARG00000060452 CGP 7955 12:38944949-39272817
GeneTranscriptPositionBiotype
ENSDARG00000045036 (cdc42ep4b)
CDC42 effector protein (Rho GTPase binding) 4b 		ENSDART00000066211 (cdc42ep4b-201) 38947811-38948821 protein_coding
ENSDART00000152951 (cdc42ep4b-001) 38944949-38987240 protein_coding
ENSDARG00000060452 (sdk2b)
sidekick homolog 2b (chicken) 		ENSDART00000085121 (sdk2b-201) 39001441-39272817 protein_coding
ENSDART00000140353 (sdk2b-001) 39001357-39272817 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003AC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000179604-ENSG00000069188 CGP 9606 17:73283624-73644089
GeneTranscriptPositionBiotype
ENSG00000069188 (SDK2)
sidekick cell adhesion molecule 2 		ENST00000392650 (SDK2-002) 73334384-73644089 protein_coding
ENST00000410094 (SDK2-006) 73338443-73369213 processed_transcript
ENST00000424778 (SDK2-004) 73337939-73414655 protein_coding
ENST00000479356 (SDK2-001) 73357370-73437769 retained_intron
ENST00000585283 (SDK2-007) 73504340-73507594 processed_transcript
ENSG00000179604 (CDC42EP4)
CDC42 effector protein (Rho GTPase binding) 4 		ENST00000335793 (CDC42EP4-001) 73283624-73312175 protein_coding
ENST00000439510 (CDC42EP4-003) 73283625-73311993 protein_coding
ENST00000578516 (CDC42EP4-005) 73311054-73312005 processed_transcript
ENST00000579611 (CDC42EP4-004) 73286282-73312001 protein_coding
ENST00000580315 (CDC42EP4-006) 73286119-73311408 protein_coding
ENST00000581014 (CDC42EP4-009) 73285178-73311997 protein_coding
ENST00000581045 (CDC42EP4-007) 73286518-73310198 processed_transcript
ENST00000582303 (CDC42EP4-008) 73306698-73309895 processed_transcript
ENSG00000264985 (RP11-449L23.2)
 ENST00000583547 (RP11-449L23.2-001) 73513685-73518770 antisense
ENSG00000265780 (RP11-449L23.3)
 ENST00000583712 (RP11-449L23.3-001) 73519846-73521407 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0003AC_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041598-ENSMUSG00000041592 CGP 10090 11:113726850-114067046
GeneTranscriptPositionBiotype
ENSMUSG00000041592 (Sdk2)
sidekick homolog 2 (chicken) 		ENSMUST00000041627 (Sdk2-001) 113776374-114066218 protein_coding
ENSMUST00000125879 (Sdk2-005) 113806341-113826219 processed_transcript
ENSMUST00000141943 (Sdk2-003) 113848562-114065975 protein_coding
ENSMUST00000144301 (Sdk2-004) 113941423-114067029 processed_transcript
ENSMUST00000155651 (Sdk2-002) 113865600-114067046 processed_transcript
ENSMUST00000156955 (Sdk2-006) 113793839-113810423 processed_transcript
ENSMUSG00000041598 (Cdc42ep4)
CDC42 effector protein (Rho GTPase binding) 4 		ENSMUST00000053536 (Cdc42ep4-001) 113726852-113751881 protein_coding
ENSMUST00000106616 (Cdc42ep4-002) 113726850-113751318 protein_coding
ENSMUST00000131488 (Cdc42ep4-004) 113728983-113739322 protein_coding
ENSMUST00000153453 (Cdc42ep4-003) 113729305-113751154 protein_coding
ENSMUSG00000083090 (Gm11736)
predicted gene 11736 		ENSMUST00000121468 (Gm11736-001) 113756702-113757206 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003AC_0001ENSDARG00000045036ENSDART00000066211ENSDART00000152951ENSDARG00000060452ENSDART00000085121ENSDART00000140353CIL_0003AC_0002ENSG00000069188ENST00000392650ENST00000410094ENST00000424778ENST00000479356ENST00000585283ENSG00000179604ENST00000335793ENST00000439510ENST00000578516ENST00000579611ENST00000580315ENST00000581014ENST00000581045ENST00000582303ENSG00000264985ENST00000583547ENSG00000265780ENST00000583712CIL_0003AC_0003ENSMUSG00000041592ENSMUST00000041627ENSMUST00000125879ENSMUST00000141943ENSMUST00000144301ENSMUST00000155651ENSMUST00000156955ENSMUSG00000041598ENSMUST00000053536ENSMUST00000106616ENSMUST00000131488ENSMUST00000153453ENSMUSG00000083090ENSMUST00000121468
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003AC_0001ENSDARG00000045036ENSDART00000066211ENSDART00000152951ENSDARG00000060452ENSDART00000085121ENSDART00000140353CIL_0003AC_0002ENSG00000069188ENST00000392650ENST00000410094ENST00000424778ENST00000479356ENST00000585283ENSG00000179604ENST00000335793ENST00000439510ENST00000579611ENST00000580315ENSG00000264985ENST00000583547ENSG00000265780ENST00000583712CIL_0003AC_0003ENSMUSG00000041592ENSMUST00000041627ENSMUST00000125879ENSMUST00000141943ENSMUST00000144301ENSMUST00000155651ENSMUST00000156955ENSMUSG00000041598ENSMUST00000053536ENSMUST00000106616ENSMUSG00000083090ENSMUST00000121468
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000045036 ENSDART00000066211 N/A N/A N/A N/A N/A N/A N/A N/A 0.658±0.00 N/A N/A N/A N/A N/A
ENSDART00000152951 N/A N/A N/A 13.546±2.95 N/A N/A 19.581±9.98 9.233±2.71 0.873±0.00 N/A 3.930±0.00 N/A N/A N/A
ENSDARG00000060452 ENSDART00000085121 N/A N/A N/A N/A N/A N/A 4.661±0.00 N/A 0.021±0.00 N/A 0.115±0.00 N/A N/A N/A
ENSDART00000140353 N/A N/A N/A N/A N/A N/A 1.194±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000069188 ENST00000392650 N/A 0.094±0.00 0.042±0.00 0.271±0.12 N/A N/A N/A N/A 0.046±0.00 N/A N/A N/A N/A 1.039±0.31
ENST00000410094 N/A N/A N/A N/A 0.283±0.00 N/A N/A N/A 0.142±0.00 N/A N/A 0.330±0.00 0.411±0.00 N/A
ENST00000424778 0.051±0.00 N/A N/A N/A N/A 0.254±0.00 0.187±0.00 N/A N/A 0.194±0.13 N/A 0.241±0.06 0.542±0.00 10.741±0.12
ENST00000479356 N/A N/A N/A N/A N/A N/A 0.068±0.00 N/A N/A 0.074±0.00 N/A N/A 0.220±0.00 8.280±0.00
ENST00000585283 N/A N/A N/A N/A N/A N/A N/A N/A 0.443±0.00 N/A N/A N/A N/A N/A
ENSG00000179604 ENST00000335793 43.545±0.00 16.873±0.00 N/A 10.685±8.90 9.265±7.69 13.215±11.31 8.084±6.15 5.778±3.91 2.866±2.00 10.153±8.71 5.262±0.00 35.574±21.37 21.003±0.91 11.923±0.00
ENST00000439510 34.887±0.00 13.384±0.00 N/A 12.924±11.25 17.413±0.00 15.901±0.00 N/A 9.822±0.00 2.886±0.60 4.565±3.87 1.037±0.00 4.063±0.74 7.070±1.41 5.979±4.35
ENST00000578516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579611 N/A N/A 5.056±0.00 N/A N/A N/A N/A N/A N/A N/A 1.741±0.00 N/A N/A N/A
ENST00000580315 N/A N/A N/A N/A N/A 3.978±0.00 N/A N/A 6.437±0.00 N/A N/A 5.570±0.00 N/A N/A
ENST00000581014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000264985 ENST00000583547 N/A N/A N/A 0.091±0.02 N/A 0.017±0.00 N/A N/A N/A 0.117±0.00 N/A 0.024±0.00 N/A 0.021±0.00
ENSG00000265780 ENST00000583712 0.023±0.00 0.092±0.00 N/A 0.100±0.04 0.048±0.00 0.054±0.00 0.077±0.00 0.012±0.00 0.010±0.00 0.021±0.00 0.061±0.00 0.052±0.00 N/A 0.173±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041592 ENSMUST00000041627 0.374±0.05 0.149±0.06 N/A 1.888±1.26 0.129±0.08 0.259±0.10 0.103±0.04 0.076±0.02 0.045±0.03 0.165±0.05 0.033±0.01 0.250±0.15 1.489±1.60 1.010±0.74
ENSMUST00000125879 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.239±0.00 4.606±0.00
ENSMUST00000141943 N/A N/A N/A N/A N/A N/A 0.098±0.00 N/A N/A N/A N/A 0.333±0.00 N/A N/A
ENSMUST00000144301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.405±0.00 N/A N/A
ENSMUST00000155651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.189±0.00 N/A N/A
ENSMUST00000156955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.144±0.00 N/A N/A N/A
ENSMUSG00000041598 ENSMUST00000053536 29.145±5.72 87.339±13.85 8.767±0.69 17.039±11.53 23.203±4.85 21.075±3.65 4.314±0.95 7.118±0.57 8.917±1.79 40.509±10.82 1.661±0.54 23.241±7.34 17.791±2.18 6.222±0.22
ENSMUST00000106616 3.483±0.37 N/A 1.892±0.07 N/A 2.938±0.15 2.677±0.22 0.489±0.04 0.839±0.11 2.582±1.17 5.242±0.70 N/A 2.915±0.82 2.400±0.09 6.320±2.83
ENSMUST00000131488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000083090 ENSMUST00000121468 0.265±0.01 N/A 0.068±0.04 0.127±0.02 0.302±0.15 N/A N/A 0.089±0.00 0.037±0.04 0.166±0.04 N/A 0.447±0.13 0.372±0.28 0.092±0.01

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