C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sidekick homolog 2 (chicken)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041627 Sdk2-001 ENSMUSG00000041592 10090 - 11:113776374-114066218 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041627
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041627 0.374±0.05 0.149±0.06 1.888±1.26 0.129±0.08 0.259±0.10 0.103±0.04 0.076±0.02 0.045±0.03 0.165±0.05 0.033±0.01 0.250±0.15 1.489±1.60 1.010±0.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R4 CIL_0007R4_0002 VISTA 11:113433041-114034346
CIL_0008QM CIL_0008QM_0002 VISTA 11:113678008-114283381
CIL_0003AC CIL_0003AC_0003 CGP 11:113726850-114067046
CIL_00073F CIL_00073F_0002 CGP 11:113776374-114672331

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0007155 IEA cell adhesion
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000140353 sdk2b-001 protein_coding Danio_rerio 0 2459
ENSDART00000085121 sdk2b-201 protein_coding Danio_rerio 0 2071
ENST00000392650 SDK2-002 protein_coding Homo_sapiens 0 7699
ENST00000410094 SDK2-006 processed_transcript Homo_sapiens 0 1864
ENST00000424778 SDK2-004 protein_coding Homo_sapiens 0 2750
ENST00000479356 SDK2-001 retained_intron Homo_sapiens 0 5548

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