C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CDC42 effector protein (Rho GTPase binding) 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041598 Cdc42ep4 10090 - 11:113726850-113751881 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000053536 Cdc42ep4-001 113726852-113751881 protein_coding
  ENSMUST00000106616 Cdc42ep4-002 113726850-113751318 protein_coding
  ENSMUST00000131488 Cdc42ep4-004 113728983-113739322 protein_coding
  ENSMUST00000153453 Cdc42ep4-003 113729305-113751154 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053536ENSMUST00000106616
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053536 29.145±5.72 87.339±13.85 8.767±0.69 17.039±11.53 23.203±4.85 21.075±3.65 4.314±0.95 7.118±0.57 8.917±1.79 40.509±10.82 1.661±0.54 23.241±7.34 17.791±2.18 6.222±0.22
ENSMUST00000106616 3.483±0.37 N/A 1.892±0.07 N/A 2.938±0.15 2.677±0.22 0.489±0.04 0.839±0.11 2.582±1.17 5.242±0.70 N/A 2.915±0.82 2.400±0.09 6.320±2.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R4 CIL_0007R4_0002 VISTA 11:113433041-114034346
CIL_0008QM CIL_0008QM_0002 VISTA 11:113678008-114283381
CIL_00073C CIL_00073C_0002 CGP 11:113698172-113751881
CIL_0003AC CIL_0003AC_0003 CGP 11:113726850-114067046

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0007266 IDA Rho protein signal transduction
GO:0008360 IEA regulation of cell shape
GO:0015629 IEA actin cytoskeleton
GO:0015630 IEA microtubule cytoskeleton
GO:0031274 IEA positive regulation of pseudopodium assembly
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039704 cdc42ep4a CDC42 effector protein (Rho GTPase binding) 4a protein_coding Danio_rerio
ENSDARG00000045036 cdc42ep4b CDC42 effector protein (Rho GTPase binding) 4b protein_coding Danio_rerio
ENSG00000179604 CDC42EP4 CDC42 effector protein (Rho GTPase binding) 4 protein_coding Homo_sapiens

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