C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDC42 effector protein (Rho GTPase binding) 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106616 Cdc42ep4-002 ENSMUSG00000041598 10090 - 11:113726850-113751318 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000106616
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000106616 3.483±0.37 1.892±0.07 2.938±0.15 2.677±0.22 0.489±0.04 0.839±0.11 2.582±1.17 5.242±0.70 2.915±0.82 2.400±0.09 6.320±2.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R4 CIL_0007R4_0002 VISTA 11:113433041-114034346
CIL_0008QM CIL_0008QM_0002 VISTA 11:113678008-114283381
CIL_00073C CIL_00073C_0002 CGP 11:113698172-113751881
CIL_0003AC CIL_0003AC_0003 CGP 11:113726850-114067046

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0007266 IDA Rho protein signal transduction
GO:0008360 IEA regulation of cell shape
GO:0015629 IEA actin cytoskeleton
GO:0015630 IEA microtubule cytoskeleton
GO:0031274 IEA positive regulation of pseudopodium assembly
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000249014 CDC42EP1-001 protein_coding Homo_sapiens 3e-16 92
ENST00000335793 CDC42EP4-001 protein_coding Homo_sapiens 0 909
ENST00000415670 CDC42EP1-004 protein_coding Homo_sapiens 0.000000000008 75
ENST00000430687 CDC42EP1-002 protein_coding Homo_sapiens 1e-16 92
ENST00000580315 CDC42EP4-006 protein_coding Homo_sapiens 0 490

Loading