C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scaffold attachment factor B2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075510 Safb2-001 ENSMUSG00000042625 10090 - 17:56562939-56584585 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075510
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075510 7.104±1.88 7.232±0.72 15.031±3.46 17.152±7.02 8.742±2.14 11.086±1.81 4.366±1.04 8.957±0.80 11.498±6.68 19.179±5.67 6.135±1.50 26.464±11.60 15.726±4.36 24.085±3.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JF CIL_0003JF_0002 CGP 17:56511248-56584585
CIL_0003UZ CIL_0003UZ_0002 CGP 17:56560965-56606294

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0042802 IEA identical protein binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252542 SAFB2-001 protein_coding Homo_sapiens 0 1214
ENST00000292123 SAFB-003 protein_coding Homo_sapiens 0 327
ENST00000454510 SAFB-004 protein_coding Homo_sapiens 0 327
ENST00000588852 SAFB-002 protein_coding Homo_sapiens 0 327
ENST00000589863 SAFB-005 nonsense_mediated_decay Homo_sapiens 0 327
ENST00000592224 SAFB-001 protein_coding Homo_sapiens 0 327
ENST00000592599 SAFB2-003 retained_intron Homo_sapiens 0 244
ENST00000592707 SAFB-009 retained_intron Homo_sapiens 0 307

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