C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin protein ligase E3 component n-recognin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055758 Ubr3-001 ENSMUSG00000044308 10090 + 2:69897246-70024013 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055758
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055758 8.422±2.53 8.140±1.04 7.067±0.13 9.672±1.11 7.713±1.97 5.267±1.41 15.535±1.38 8.102±1.55 5.638±2.42 8.340±2.81 31.626±2.40 6.599±1.67 5.226±0.94 1.687±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VY CIL_0007VY_0002 VISTA 2:69698509-70299848
CIL_0004SI CIL_0004SI_0002 CGP 2:69871198-70024013
CIL_0004SH CIL_0004SH_0002 CGP 2:69897246-70429198

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0001967 IMP suckling behavior
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0006511 IDA ubiquitin-dependent protein catabolic process
GO:0007608 IMP sensory perception of smell
GO:0008270 IEA zinc ion binding
GO:0009790 IMP embryo development
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0042048 IMP olfactory behavior

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272793 UBR3-001 protein_coding Homo_sapiens 0 7864
ENST00000392632 UBR3-008 protein_coding Homo_sapiens 0 4013
ENST00000418381 UBR3-201 protein_coding Homo_sapiens 0 7810
ENST00000430321 UBR3-003 nonsense_mediated_decay Homo_sapiens 0 1528
ENST00000439681 UBR3-007 protein_coding Homo_sapiens 0 1709
ENST00000444475 UBR3-005 nonsense_mediated_decay Homo_sapiens 0 2074
ENST00000465630 UBR3-006 processed_transcript Homo_sapiens 0 191
ENST00000474426 UBR3-004 retained_intron Homo_sapiens 0 2071
ENST00000477461 UBR3-009 retained_intron Homo_sapiens 0 579
ENST00000487689 UBR3-010 retained_intron Homo_sapiens 0 752

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