C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin protein ligase E3 component n-recognin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126165 Ubr3-005 ENSMUSG00000044308 10090 + 2:69993712-70022545 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderLiverPlacentaTestisENSMUST00000126165
Transcript ID Adipose Bladder Liver Placenta Testis
ENSMUST00000126165 4.158±0.00 5.029±0.77 2.301±0.28 3.492±0.00 1.812±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VY CIL_0007VY_0002 VISTA 2:69698509-70299848
CIL_0004SI CIL_0004SI_0002 CGP 2:69871198-70024013
CIL_0004SH CIL_0004SH_0002 CGP 2:69897246-70429198

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272793 UBR3-001 protein_coding Homo_sapiens 0 2037
ENST00000392632 UBR3-008 protein_coding Homo_sapiens 0 2037
ENST00000418381 UBR3-201 protein_coding Homo_sapiens 0 2037
ENST00000430321 UBR3-003 nonsense_mediated_decay Homo_sapiens 0 1568
ENST00000439681 UBR3-007 protein_coding Homo_sapiens 0 1672
ENST00000444475 UBR3-005 nonsense_mediated_decay Homo_sapiens 0 2418
ENST00000465630 UBR3-006 processed_transcript Homo_sapiens 0 189
ENST00000474426 UBR3-004 retained_intron Homo_sapiens 0 2032

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