C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L27A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000046364 Rpl27a 10090 + 7:109519147-109522367 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000053298 Rpl27a-005 109519213-109521766 retained_intron
  ENSMUST00000132877 Rpl27a-002 109519196-109521153 retained_intron
  ENSMUST00000143107 Rpl27a-001 109519147-109522367 protein_coding
  ENSMUST00000149143 Rpl27a-004 109519199-109520179 retained_intron
  ENSMUST00000156921 Rpl27a-003 109519220-109520597 nonsense_mediated_decay
  ENSMUST00000174303 Rpl27a-006 109519270-109519938 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053298ENSMUST00000143107ENSMUST00000156921
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053298 N/A N/A N/A N/A 122.745±0.00 N/A N/A N/A N/A N/A 31.857±10.35 155.915±55.52 N/A N/A
ENSMUST00000143107 131.194±62.04 58.687±20.80 262.881±6.23 91.975±30.66 128.903±84.58 240.472±44.74 38.419±9.76 94.827±29.63 173.374±116.34 129.106±17.70 39.072±10.80 314.179±125.77 144.910±87.44 67.076±24.70
ENSMUST00000156921 131.948±36.38 121.390±21.18 442.952±62.18 139.080±0.00 105.391±49.08 103.696±20.66 96.785±15.76 163.024±60.93 186.852±195.47 73.494±17.01 59.284±0.00 136.491±123.43 312.425±250.60 91.568±11.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q2 CIL_0008Q2_0002 VISTA 7:109258267-109860076
CIL_00049H CIL_00049H_0002 CGP 7:109449006-109522367
CIL_00049E CIL_00049E_0002 CGP 7:109519147-109617147

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0016020 IEA membrane
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000166441 RPL27A ribosomal protein L27a protein_coding Homo_sapiens

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