C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L27A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156921 Rpl27a-003 ENSMUSG00000046364 10090 + 7:109519220-109520597 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000156921
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000156921 131.948±36.38 121.390±21.18 442.952±62.18 139.080±0.00 105.391±49.08 103.696±20.66 96.785±15.76 163.024±60.93 186.852±195.47 73.494±17.01 59.284±0.00 136.491±123.43 312.425±250.60 91.568±11.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q2 CIL_0008Q2_0002 VISTA 7:109258267-109860076
CIL_00049H CIL_00049H_0002 CGP 7:109449006-109522367
CIL_00049E CIL_00049E_0002 CGP 7:109519147-109617147

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314138 RPL27A-001 protein_coding Homo_sapiens 0 350
ENST00000358609 RPL27AP-001 processed_pseudogene Homo_sapiens 0 250
ENST00000439114 AC114755.4-001 processed_pseudogene Homo_sapiens 7e-36 154
ENST00000448912 AC104076.2-001 processed_pseudogene Homo_sapiens 0 261
ENST00000469428 RPL27AP5-001 processed_pseudogene Homo_sapiens 0 283
ENST00000492974 RP11-475C16.1-001 processed_pseudogene Homo_sapiens 0 344
ENST00000524496 RPL27A-007 protein_coding Homo_sapiens 3e-21 106
ENST00000525981 RPL27A-010 protein_coding Homo_sapiens 8e-39 163
ENST00000526562 RPL27A-009 protein_coding Homo_sapiens 0 191
ENST00000529227 RPL27A-002 retained_intron Homo_sapiens 2e-23 113
ENST00000530022 RPL27A-008 protein_coding Homo_sapiens 0 351
ENST00000530585 RPL27A-003 retained_intron Homo_sapiens 0 189
ENST00000531978 RPL27A-004 protein_coding Homo_sapiens 0 350
ENST00000532359 RPL27A-006 protein_coding Homo_sapiens 0 191
ENST00000534599 RPL27A-005 nonsense_mediated_decay Homo_sapiens 3e-21 106
ENST00000578806 RP11-692N5.2-001 processed_pseudogene Homo_sapiens 0 237

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