C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L27A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000132877 Rpl27a-002 ENSMUSG00000046364 10090 + 7:109519196-109521153 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q2 CIL_0008Q2_0002 VISTA 7:109258267-109860076
CIL_00049H CIL_00049H_0002 CGP 7:109449006-109522367
CIL_00049E CIL_00049E_0002 CGP 7:109519147-109617147

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314138 RPL27A-001 protein_coding Homo_sapiens 1e-22 113
ENST00000358609 RPL27AP-001 processed_pseudogene Homo_sapiens 3e-35 152
ENST00000439114 AC114755.4-001 processed_pseudogene Homo_sapiens 6e-37 158
ENST00000469428 RPL27AP5-001 processed_pseudogene Homo_sapiens 0.0000000000001 81
ENST00000492974 RP11-475C16.1-001 processed_pseudogene Homo_sapiens 2e-21 106
ENST00000524496 RPL27A-007 protein_coding Homo_sapiens 6e-23 111
ENST00000525981 RPL27A-010 protein_coding Homo_sapiens 0.00000000000002 82
ENST00000526562 RPL27A-009 protein_coding Homo_sapiens 7e-22 108
ENST00000529227 RPL27A-002 retained_intron Homo_sapiens 3e-26 122
ENST00000530022 RPL27A-008 protein_coding Homo_sapiens 1e-21 108
ENST00000530585 RPL27A-003 retained_intron Homo_sapiens 2e-37 159
ENST00000530913 RPL27A-011 protein_coding Homo_sapiens 8e-28 128
ENST00000531978 RPL27A-004 protein_coding Homo_sapiens 3e-23 113
ENST00000532359 RPL27A-006 protein_coding Homo_sapiens 1e-23 113
ENST00000534599 RPL27A-005 nonsense_mediated_decay Homo_sapiens 7e-23 111
ENST00000578806 RP11-692N5.2-001 processed_pseudogene Homo_sapiens 0.00000001 64

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