C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L27a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166441 RPL27A 9606 + 11:8682411-8714759 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000314138 RPL27A-001 8682411-8689872 protein_coding
  ENST00000524496 RPL27A-007 8682789-8685847 protein_coding
  ENST00000525981 RPL27A-010 8683215-8685847 protein_coding
  ENST00000526562 RPL27A-009 8683201-8685848 protein_coding
  ENST00000529227 RPL27A-002 8682788-8683779 retained_intron
  ENST00000530022 RPL27A-008 8682810-8685848 protein_coding
  ENST00000530585 RPL27A-003 8682788-8684489 retained_intron
  ENST00000530913 RPL27A-011 8684259-8685848 protein_coding
  ENST00000531102 RPL27A-012 8689130-8714759 processed_transcript
  ENST00000531978 RPL27A-004 8682788-8685415 protein_coding
  ENST00000532359 RPL27A-006 8682792-8685848 protein_coding
  ENST00000534599 RPL27A-005 8682792-8685845 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000314138ENST00000524496ENST00000525981ENST00000526562ENST00000530022ENST00000532359
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000314138 N/A N/A N/A 3.600±0.77 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524496 124.879±0.00 215.379±0.00 N/A 46.436±0.00 120.893±0.00 249.366±0.00 126.588±0.00 123.874±0.00 116.507±0.00 417.619±0.00 161.128±0.00 400.601±0.00 237.251±115.06 134.311±0.00
ENST00000525981 500.709±0.00 1042.250±0.00 N/A 121.331±0.00 516.583±0.00 592.338±0.00 N/A N/A N/A N/A N/A N/A N/A 376.057±0.00
ENST00000526562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 43.400±0.00 N/A N/A N/A
ENST00000530022 N/A N/A 14.745±0.00 25.097±0.00 55.845±0.00 38.711±0.00 20.867±0.00 51.274±0.00 77.875±0.00 56.831±0.00 21.524±0.00 322.116±216.61 255.746±143.04 39.507±0.00
ENST00000532359 313.261±0.00 523.937±0.00 57.403±0.00 95.547±39.42 198.215±53.85 337.012±210.83 121.665±83.47 230.820±115.77 228.254±44.23 500.706±428.95 200.739±161.25 749.805±724.22 850.814±441.49 177.814±118.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q2 CIL_0008Q2_0001 VISTA 11:8432154-9033661
CIL_00049H CIL_00049H_0001 CGP 11:8612037-8714759
CIL_00049E CIL_00049E_0001 CGP 11:8682411-8910951

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000046364 Rpl27a ribosomal protein L27A protein_coding Mus_musculus

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