C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000047215 Rpl9 10090 - 5:65388364-65391443 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057885 Rpl9-001 65388364-65391443 protein_coding
  ENSMUST00000118543 Rpl9-006 65388446-65391385 protein_coding
  ENSMUST00000120094 Rpl9-007 65388365-65391380 protein_coding
  ENSMUST00000127874 Rpl9-003 65390406-65391395 protein_coding
  ENSMUST00000128074 Rpl9-002 65388367-65391398 retained_intron
  ENSMUST00000140879 Rpl9-010 65388365-65391398 retained_intron
  ENSMUST00000147660 Rpl9-004 65388910-65391379 retained_intron
  ENSMUST00000147966 Rpl9-009 65388407-65389373 retained_intron
  ENSMUST00000150815 Rpl9-005 65389849-65390991 retained_intron
  ENSMUST00000151917 Rpl9-008 65388364-65388914 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057885ENSMUST00000120094ENSMUST00000127874
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057885 194.858±51.18 21.350±3.42 558.803±25.66 184.248±114.02 142.100±45.00 135.179±19.54 93.640±3.08 129.803±15.06 344.353±295.17 101.272±38.80 252.430±24.77 213.804±226.13 328.974±193.75 58.814±27.32
ENSMUST00000120094 N/A N/A N/A 22.190±0.00 N/A N/A N/A N/A N/A N/A 43.951±0.00 98.206±49.69 61.732±21.64 13.843±0.00
ENSMUST00000127874 N/A 4.455±0.82 N/A N/A N/A 7.645±0.00 N/A N/A N/A N/A N/A 8.371±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TV CIL_0002TV_0003 CGP 5:65388364-65410693

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003735 IC structural constituent of ribosome
GO:0006412 IC translation
GO:0019843 IEA rRNA binding
GO:0022625 IDA cytosolic large ribosomal subunit

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037350 rpl9 ribosomal protein L9 protein_coding Danio_rerio

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