C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057885 Rpl9-001 ENSMUSG00000047215 10090 - 5:65388364-65391443 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057885
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057885 194.858±51.18 21.350±3.42 558.803±25.66 184.248±114.02 142.100±45.00 135.179±19.54 93.640±3.08 129.803±15.06 344.353±295.17 101.272±38.80 252.430±24.77 213.804±226.13 328.974±193.75 58.814±27.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TV CIL_0002TV_0003 CGP 5:65388364-65410693

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IC structural constituent of ribosome
GO:0006412 IC translation
GO:0019843 IEA rRNA binding
GO:0022625 IDA cytosolic large ribosomal subunit

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295955 RPL9-001 protein_coding Homo_sapiens 0 800
ENST00000330965 RPL9P7-001 processed_pseudogene Homo_sapiens 0 747
ENST00000392269 RP11-256K7.1-001 processed_pseudogene Homo_sapiens 0 516
ENST00000393394 RPL9-201 protein_coding Homo_sapiens 0 756
ENST00000418824 UBE2Q2P6-002 processed_transcript Homo_sapiens 0 529
ENST00000420684 AC009500.2-001 processed_pseudogene Homo_sapiens 0 270
ENST00000423843 AC093698.1-001 processed_pseudogene Homo_sapiens 0 592
ENST00000424673 RPL9P2-001 processed_pseudogene Homo_sapiens 0 451
ENST00000437992 RPL9-010 retained_intron Homo_sapiens 0 438
ENST00000449470 RPL9-002 protein_coding Homo_sapiens 0 747
ENST00000461606 RPL9P28-001 processed_pseudogene Homo_sapiens 0 630
ENST00000463864 CTD-2290C23.1-001 processed_pseudogene Homo_sapiens 0 636
ENST00000464118 RPL9P32-001 processed_pseudogene Homo_sapiens 0 667
ENST00000466501 UBE2Q2P6-001 transcribed_processed_pseudogene Homo_sapiens 0 752
ENST00000472460 RP11-851M3.1-001 processed_pseudogene Homo_sapiens 0 492
ENST00000474761 CTD-2377D24.2-001 processed_pseudogene Homo_sapiens 6e-37 156
ENST00000489027 RP11-64K12.1-001 processed_pseudogene Homo_sapiens 0 575
ENST00000489563 RPL9P25-001 processed_pseudogene Homo_sapiens 0 678
ENST00000491923 RPL9P16-001 processed_pseudogene Homo_sapiens 0 435
ENST00000495117 RPL9P31-001 processed_pseudogene Homo_sapiens 0 416
ENST00000503040 RPL9-011 protein_coding Homo_sapiens 0 669
ENST00000503277 RPL9-008 retained_intron Homo_sapiens 0 680
ENST00000504470 RPL9-009 protein_coding Homo_sapiens 0 649
ENST00000506581 RPL9-012 protein_coding Homo_sapiens 0 248
ENST00000508595 RPL9-007 protein_coding Homo_sapiens 0 680
ENST00000511075 RPL9-006 retained_intron Homo_sapiens 0 547
ENST00000511084 CTB-85P21.1-001 processed_pseudogene Homo_sapiens 0 198
ENST00000511643 RPL9-013 retained_intron Homo_sapiens 0 250
ENST00000514842 RPL9-005 retained_intron Homo_sapiens 0 433
ENST00000561773 TIPIN-006 processed_transcript Homo_sapiens 0 688

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