C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127874 Rpl9-003 ENSMUSG00000047215 10090 - 5:65390406-65391395 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonOvaryENSMUST00000127874
Transcript ID Adrenal Colon Ovary
ENSMUST00000127874 4.455±0.82 7.645±0.00 8.371±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TV CIL_0002TV_0003 CGP 5:65388364-65410693

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IC structural constituent of ribosome
GO:0006412 IC translation
GO:0019843 IEA rRNA binding
GO:0022625 IDA cytosolic large ribosomal subunit

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295955 RPL9-001 protein_coding Homo_sapiens 0 294
ENST00000330965 RPL9P7-001 processed_pseudogene Homo_sapiens 0 294
ENST00000393394 RPL9-201 protein_coding Homo_sapiens 0 294
ENST00000418824 UBE2Q2P6-002 processed_transcript Homo_sapiens 0 294
ENST00000437992 RPL9-010 retained_intron Homo_sapiens 0 228
ENST00000449470 RPL9-002 protein_coding Homo_sapiens 0 313
ENST00000461606 RPL9P28-001 processed_pseudogene Homo_sapiens 0 241
ENST00000463864 CTD-2290C23.1-001 processed_pseudogene Homo_sapiens 0 272
ENST00000464118 RPL9P32-001 processed_pseudogene Homo_sapiens 0 267
ENST00000466501 UBE2Q2P6-001 transcribed_processed_pseudogene Homo_sapiens 0 294
ENST00000474761 CTD-2377D24.2-001 processed_pseudogene Homo_sapiens 6e-37 156
ENST00000503040 RPL9-011 protein_coding Homo_sapiens 0 294
ENST00000503277 RPL9-008 retained_intron Homo_sapiens 0 228
ENST00000504470 RPL9-009 protein_coding Homo_sapiens 0 313
ENST00000506581 RPL9-012 protein_coding Homo_sapiens 5e-22 108
ENST00000508595 RPL9-007 protein_coding Homo_sapiens 0 228
ENST00000511075 RPL9-006 retained_intron Homo_sapiens 0 294
ENST00000514842 RPL9-005 retained_intron Homo_sapiens 0 313

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