C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002TV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000037350-ENSDARG00000022845 CGP 7955 1:22043597-22057562
GeneTranscriptPositionBiotype
ENSDARG00000022845 (lias)
lipoic acid synthetase 		ENSDART00000036448 (lias-001) 22048804-22057562 protein_coding
ENSDART00000144792 (lias-002) 22049016-22053796 processed_transcript
ENSDARG00000037350 (rpl9)
ribosomal protein L9 		ENSDART00000054338 (rpl9-001) 22043597-22048598 protein_coding
ENSDART00000054340 (rpl9-002) 22043821-22048568 protein_coding
ENSDART00000122877 (rpl9-005) 22043953-22048134 retained_intron
ENSDART00000130277 (rpl9-004) 22043824-22048519 protein_coding
ENSDART00000133195 (rpl9-006) 22044982-22045885 retained_intron
ENSDART00000147800 (rpl9-003) 22043821-22048487 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0002TV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163682-ENSG00000121897 CGP 9606 4:39454124-39477653
GeneTranscriptPositionBiotype
ENSG00000121897 (LIAS)
lipoic acid synthetase 		ENST00000261434 (LIAS-001) 39459000-39477653 protein_coding
ENST00000340169 (LIAS-008) 39459000-39477584 protein_coding
ENST00000381846 (LIAS-002) 39459072-39477621 protein_coding
ENST00000424936 (LIAS-004) 39459058-39464163 retained_intron
ENST00000509519 (LIAS-003) 39459045-39464238 retained_intron
ENST00000513731 (LIAS-006) 39459066-39477155 protein_coding
ENST00000515061 (LIAS-007) 39459120-39466072 processed_transcript
ENSG00000163682 (RPL9)
ribosomal protein L9 		ENST00000295955 (RPL9-001) 39454124-39458948 protein_coding
ENST00000437992 (RPL9-010) 39456328-39458915 retained_intron
ENST00000449470 (RPL9-002) 39454137-39458888 protein_coding
ENST00000503040 (RPL9-011) 39454562-39458915 protein_coding
ENST00000503277 (RPL9-008) 39454132-39458441 retained_intron
ENST00000504470 (RPL9-009) 39454624-39458922 protein_coding
ENST00000506581 (RPL9-012) 39454139-39457682 protein_coding
ENST00000508595 (RPL9-007) 39454137-39458925 protein_coding
ENST00000511075 (RPL9-006) 39455811-39458931 retained_intron
ENST00000511643 (RPL9-013) 39454138-39455276 retained_intron
ENST00000514842 (RPL9-005) 39454171-39458901 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0002TV_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000047215-ENSMUSG00000029199 CGP 10090 5:65388364-65410693
GeneTranscriptPositionBiotype
ENSMUSG00000029199 (Lias)
lipoic acid synthetase 		ENSMUST00000031101 (Lias-001) 65391497-65410693 protein_coding
ENSMUST00000122026 (Lias-003) 65391541-65408950 protein_coding
ENSMUST00000126036 (Lias-004) 65391564-65395612 retained_intron
ENSMUST00000127519 (Lias-005) 65397542-65399918 retained_intron
ENSMUST00000139847 (Lias-002) 65391546-65396183 retained_intron
ENSMUSG00000047215 (Rpl9)
ribosomal protein L9 		ENSMUST00000057885 (Rpl9-001) 65388364-65391443 protein_coding
ENSMUST00000118543 (Rpl9-006) 65388446-65391385 protein_coding
ENSMUST00000120094 (Rpl9-007) 65388365-65391380 protein_coding
ENSMUST00000127874 (Rpl9-003) 65390406-65391395 protein_coding
ENSMUST00000128074 (Rpl9-002) 65388367-65391398 retained_intron
ENSMUST00000140879 (Rpl9-010) 65388365-65391398 retained_intron
ENSMUST00000147660 (Rpl9-004) 65388910-65391379 retained_intron
ENSMUST00000147966 (Rpl9-009) 65388407-65389373 retained_intron
ENSMUST00000150815 (Rpl9-005) 65389849-65390991 retained_intron
ENSMUST00000151917 (Rpl9-008) 65388364-65388914 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002TV_0001ENSDARG00000022845ENSDART00000036448ENSDART00000144792ENSDARG00000037350ENSDART00000054338ENSDART00000054340ENSDART00000122877ENSDART00000130277ENSDART00000133195ENSDART00000147800CIL_0002TV_0002ENSG00000121897ENST00000261434ENST00000340169ENST00000381846ENST00000424936ENST00000509519ENST00000513731ENST00000515061ENSG00000163682ENST00000295955ENST00000437992ENST00000449470ENST00000503040ENST00000503277ENST00000504470ENST00000506581ENST00000508595ENST00000511075ENST00000511643ENST00000514842CIL_0002TV_0003ENSMUSG00000029199ENSMUST00000031101ENSMUST00000122026ENSMUST00000126036ENSMUST00000127519ENSMUST00000139847ENSMUSG00000047215ENSMUST00000057885ENSMUST00000118543ENSMUST00000120094ENSMUST00000127874ENSMUST00000128074ENSMUST00000140879ENSMUST00000147660ENSMUST00000147966ENSMUST00000150815ENSMUST00000151917
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002TV_0001ENSDARG00000022845ENSDART00000036448ENSDARG00000037350ENSDART00000054338ENSDART00000054340ENSDART00000130277ENSDART00000133195ENSDART00000147800CIL_0002TV_0002ENSG00000121897ENST00000261434ENST00000340169ENST00000381846ENST00000424936ENST00000509519ENST00000513731ENST00000515061ENSG00000163682ENST00000295955ENST00000503040ENST00000504470ENST00000506581ENST00000508595CIL_0002TV_0003ENSMUSG00000029199ENSMUST00000031101ENSMUST00000122026ENSMUST00000126036ENSMUSG00000047215ENSMUST00000057885ENSMUST00000120094ENSMUST00000127874
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000022845 ENSDART00000036448 N/A N/A N/A 7.965±4.72 N/A N/A 10.222±6.73 6.199±2.00 1.147±0.00 N/A 6.945±0.00 N/A N/A N/A
ENSDART00000144792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000037350 ENSDART00000054338 N/A N/A N/A 52.772±37.88 N/A N/A 234.643±195.34 207.933±272.44 306.993±0.00 N/A 201.462±0.00 N/A N/A N/A
ENSDART00000054340 N/A N/A N/A N/A N/A N/A 488.647±115.74 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000122877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000130277 N/A N/A N/A 144.908±20.24 N/A N/A 678.682±45.38 983.944±0.00 288.294±0.00 N/A 430.832±0.00 N/A N/A N/A
ENSDART00000133195 N/A N/A N/A 0.462±0.13 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000147800 N/A N/A N/A 0.968±0.36 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000121897 ENST00000261434 N/A 0.513±0.00 N/A 1.548±0.01 N/A 1.184±0.00 1.964±1.22 1.219±0.17 0.969±0.37 N/A 1.991±0.00 2.192±1.23 0.598±0.00 2.097±0.00
ENST00000340169 0.713±0.00 0.807±0.00 N/A 1.488±0.00 2.104±0.00 1.486±0.00 N/A 1.660±0.00 1.045±0.00 0.447±0.00 2.177±0.00 1.810±0.00 1.268±1.00 6.653±3.74
ENST00000381846 0.734±0.00 0.841±0.00 N/A 0.394±0.00 0.306±0.00 2.928±0.00 0.463±0.31 1.003±0.00 0.605±0.03 0.708±0.37 N/A 1.123±0.56 1.176±0.65 1.586±0.00
ENST00000424936 N/A N/A 1.937±0.00 N/A 1.364±0.00 0.469±0.00 N/A 1.129±0.00 N/A N/A N/A 0.794±0.00 N/A N/A
ENST00000509519 N/A N/A N/A N/A N/A N/A N/A N/A 0.697±0.00 0.670±0.00 N/A N/A N/A N/A
ENST00000513731 1.072±0.00 1.130±0.00 N/A 2.294±0.00 1.136±0.00 2.192±0.00 1.417±0.70 N/A 0.649±0.00 1.298±0.00 3.643±0.13 0.545±0.03 0.863±0.00 2.493±0.79
ENST00000515061 N/A N/A N/A N/A N/A N/A N/A 0.783±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000163682 ENST00000295955 N/A N/A 21.236±0.00 55.945±0.00 92.987±0.00 85.149±0.00 27.149±0.26 60.311±0.00 99.005±0.00 96.962±13.63 67.519±0.00 516.429±670.84 681.671±302.40 104.335±0.00
ENST00000437992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503040 54.381±0.00 106.298±0.00 N/A 62.416±0.00 71.672±0.00 158.389±0.00 69.857±0.00 109.919±0.00 82.694±0.00 246.177±0.00 41.486±0.00 625.798±0.00 N/A 112.071±0.00
ENST00000503277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504470 201.117±0.00 451.963±0.00 N/A 150.643±0.00 224.302±0.00 425.049±0.00 47.446±0.00 179.652±0.00 103.552±0.00 478.954±0.00 36.110±0.00 N/A N/A 258.204±0.00
ENST00000506581 126.361±0.00 216.622±0.00 46.286±0.00 77.342±7.32 99.469±52.97 157.090±55.22 19.892±0.00 110.624±17.46 65.852±0.00 84.124±0.00 85.843±0.00 607.423±522.68 N/A 129.193±0.00
ENST00000508595 N/A N/A N/A N/A 26.100±0.00 N/A 18.364±0.00 N/A 44.434±8.79 133.133±0.00 N/A 437.246±17.95 379.090±0.00 N/A
ENST00000511075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029199 ENSMUST00000031101 2.638±0.18 1.578±0.74 3.679±0.22 3.752±0.59 1.760±0.64 2.018±0.31 2.538±0.20 3.122±0.39 2.875±1.14 1.917±0.42 3.164±0.77 2.761±0.90 2.375±0.99 1.973±0.43
ENSMUST00000122026 11.696±3.80 6.018±2.02 9.509±3.47 9.616±4.05 7.577±1.01 7.316±1.58 7.822±3.09 10.564±3.20 11.093±3.08 5.991±0.97 11.991±2.53 8.934±2.72 14.466±2.31 17.339±2.97
ENSMUST00000126036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.644±0.08 8.905±0.31
ENSMUST00000127519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000047215 ENSMUST00000057885 194.858±51.18 21.350±3.42 558.803±25.66 184.248±114.02 142.100±45.00 135.179±19.54 93.640±3.08 129.803±15.06 344.353±295.17 101.272±38.80 252.430±24.77 213.804±226.13 328.974±193.75 58.814±27.32
ENSMUST00000118543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000120094 N/A N/A N/A 22.190±0.00 N/A N/A N/A N/A N/A N/A 43.951±0.00 98.206±49.69 61.732±21.64 13.843±0.00
ENSMUST00000127874 N/A 4.455±0.82 N/A N/A N/A 7.645±0.00 N/A N/A N/A N/A N/A 8.371±0.00 N/A N/A
ENSMUST00000128074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140879 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150815 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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