C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type VI, alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000097653 Col6a3-001 ENSMUSG00000048126 10090 - 1:90766860-90843952 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000097653
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000097653 64.917±33.94 2.333±1.18 34.579±0.30 1.384±1.33 29.153±10.35 17.302±6.83 4.882±1.03 3.596±1.09 0.912±0.54 19.685±0.13 2.876±1.24 29.098±14.05 5.875±7.46 1.015±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L9 CIL_0008L9_0002 VISTA 1:90453497-91055787
CIL_0000XQ CIL_0000XQ_0002 CGP 1:90602981-90843971
CIL_0007RW CIL_0007RW_0002 VISTA 1:90676298-91284359
CIL_000439 CIL_000439_0002 CGP 1:90765923-90951142

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004867 IEA serine-type endopeptidase inhibitor activity
GO:0005581 IDA collagen trimer
GO:0005615 IDA extracellular space
GO:0010951 IEA negative regulation of endopeptidase activity
GO:0031012 IDA extracellular matrix
GO:0031982 IEA vesicle
GO:0042383 IDA sarcolemma
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295550 COL6A3-001 protein_coding Homo_sapiens 0 5806
ENST00000347401 COL6A3-201 protein_coding Homo_sapiens 0 6525
ENST00000353578 COL6A3-202 protein_coding Homo_sapiens 0 5806
ENST00000392003 COL6A3-003 protein_coding Homo_sapiens 0 750
ENST00000392004 COL6A3-002 protein_coding Homo_sapiens 0 586
ENST00000409809 COL6A3-011 protein_coding Homo_sapiens 0 5806
ENST00000433762 COL6A3-008 protein_coding Homo_sapiens 0 767
ENST00000468792 COL6A3-010 retained_intron Homo_sapiens 0 303
ENST00000472056 COL6A3-012 protein_coding Homo_sapiens 0 6545
ENST00000473258 COL6A3-005 processed_transcript Homo_sapiens 0 252
ENST00000491769 COL6A3-009 retained_intron Homo_sapiens 0 1125

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