C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: synaptogyrin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177131 Syngr2-005 ENSMUSG00000048277 10090 + 11:117809683-117813826 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000177131
Transcript ID Placenta
ENSMUST00000177131 9.164±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0002 VISTA 11:117565410-118167678
CIL_0004UI CIL_0004UI_0002 CGP 11:117797660-117814283

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006605 ISA protein targeting
GO:0008021 IDA synaptic vesicle
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225777 SYNGR2-001 protein_coding Homo_sapiens 0 556
ENST00000569699 CTD-2022H16.3-001 processed_pseudogene Homo_sapiens 0 507
ENST00000585591 SYNGR2-009 protein_coding Homo_sapiens 0 556
ENST00000588282 SYNGR2-003 protein_coding Homo_sapiens 0 553
ENST00000589168 SYNGR2-004 protein_coding Homo_sapiens 0 377
ENST00000589183 SYNGR2-007 nonsense_mediated_decay Homo_sapiens 0 254
ENST00000589711 SYNGR2-002 protein_coding Homo_sapiens 5e-39 167
ENST00000590201 SYNGR2-006 protein_coding Homo_sapiens 0 418
ENST00000591770 SYNGR2-008 retained_intron Homo_sapiens 0 390
ENST00000592456 SYNGR2-005 processed_transcript Homo_sapiens 0 255

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