C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptogyrin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026649 Syngr2-001 ENSMUSG00000048277 10090 + 11:117809668-117814283 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026649
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026649 49.824±1.76 87.661±7.41 49.029±4.08 5.247±3.56 94.566±35.77 213.686±43.74 83.292±7.83 64.023±1.56 50.213±11.39 85.130±3.08 124.063±6.97 62.157±27.58 46.509±27.78 10.968±5.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0002 VISTA 11:117565410-118167678
CIL_0004UI CIL_0004UI_0002 CGP 11:117797660-117814283

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006605 ISA protein targeting
GO:0008021 IDA synaptic vesicle
GO:0016021 IEA integral component of membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225777 SYNGR2-001 protein_coding Homo_sapiens 0 793
ENST00000569699 CTD-2022H16.3-001 processed_pseudogene Homo_sapiens 0 741
ENST00000585591 SYNGR2-009 protein_coding Homo_sapiens 0 793
ENST00000588282 SYNGR2-003 protein_coding Homo_sapiens 0 555
ENST00000589168 SYNGR2-004 protein_coding Homo_sapiens 0 377
ENST00000589183 SYNGR2-007 nonsense_mediated_decay Homo_sapiens 0 254
ENST00000589711 SYNGR2-002 protein_coding Homo_sapiens 0 403
ENST00000590201 SYNGR2-006 protein_coding Homo_sapiens 0 654
ENST00000591770 SYNGR2-008 retained_intron Homo_sapiens 0 390
ENST00000592456 SYNGR2-005 processed_transcript Homo_sapiens 0 255

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