C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytochrome P450, family 20, subfamily a, polypeptide 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000049439 Cyp20a1 10090 + 1:60343323-60388060 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000060608 Cyp20a1-001 60343323-60388060 protein_coding
  ENSMUST00000114202 Cyp20a1-002 60343323-60372707 retained_intron
  ENSMUST00000148443 Cyp20a1-003 60343323-60388060 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060608ENSMUST00000114202ENSMUST00000148443
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060608 7.572±0.92 4.104±0.67 11.728±0.08 2.469±1.62 3.164±1.30 3.294±0.79 1.904±0.45 4.722±0.19 6.062±2.59 7.496±0.57 1.112±0.26 4.122±2.65 8.517±3.57 0.464±0.15
ENSMUST00000114202 1.990±0.00 2.057±0.18 N/A 1.094±0.00 2.023±0.67 1.516±0.42 1.504±0.34 N/A N/A N/A 1.600±0.00 2.338±0.73 1.879±0.00 N/A
ENSMUST00000148443 N/A N/A 3.817±0.43 1.572±0.65 0.574±0.00 0.568±0.00 N/A N/A N/A N/A 0.964±0.35 0.895±0.00 N/A 0.178±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001QW CIL_0001QW_0002 CGP 1:60180599-60388060
CIL_0000JP CIL_0000JP_0003 CGP 1:60343323-60481158

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004497 IEA monooxygenase activity
GO:0005506 IEA iron ion binding
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 IEA heme binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006040 cyp20a1 cytochrome P450, family 20, subfamily A, polypeptide 1 protein_coding Danio_rerio
ENSG00000119004 CYP20A1 cytochrome P450, family 20, subfamily A, polypeptide 1 protein_coding Homo_sapiens

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