C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytochrome P450, family 20, subfamily a, polypeptide 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060608 Cyp20a1-001 ENSMUSG00000049439 10090 + 1:60343323-60388060 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060608
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060608 7.572±0.92 4.104±0.67 11.728±0.08 2.469±1.62 3.164±1.30 3.294±0.79 1.904±0.45 4.722±0.19 6.062±2.59 7.496±0.57 1.112±0.26 4.122±2.65 8.517±3.57 0.464±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001QW CIL_0001QW_0002 CGP 1:60180599-60388060
CIL_0000JP CIL_0000JP_0003 CGP 1:60343323-60481158

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004497 IEA monooxygenase activity
GO:0005506 IEA iron ion binding
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 IEA heme binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356079 CYP20A1-001 protein_coding Homo_sapiens 0 1413
ENST00000429815 CYP20A1-003 protein_coding Homo_sapiens 0 1303
ENST00000431118 CYP20A1-005 nonsense_mediated_decay Homo_sapiens 0 1037
ENST00000443941 CYP20A1-011 protein_coding Homo_sapiens 0 675
ENST00000449301 CYP20A1-002 nonsense_mediated_decay Homo_sapiens 0 675
ENST00000461371 CYP20A1-004 processed_transcript Homo_sapiens 0 1026
ENST00000611416 CYP20A1-201 protein_coding Homo_sapiens 0 675
ENST00000613925 CYP20A1-202 protein_coding Homo_sapiens 0 1413

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