C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: piggyBac transposable element derived 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000050751 Pgbd5 10090 - 8:124369049-124439658 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000052580 Pgbd5-201 124369049-124433936 protein_coding
  ENSMUST00000128312 Pgbd5-004 124371869-124375546 processed_transcript
  ENSMUST00000136892 Pgbd5-002 124370023-124393216 protein_coding
  ENSMUST00000140012 Pgbd5-001 124369053-124434338 protein_coding
  ENSMUST00000140126 Pgbd5-005 124371885-124375111 retained_intron
  ENSMUST00000172566 Pgbd5-003 124369049-124439658 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052580ENSMUST00000136892ENSMUST00000140012ENSMUST00000140126ENSMUST00000172566
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052580 N/A 1.139±0.29 1.303±0.10 8.644±9.02 0.044±0.01 0.904±0.57 N/A 0.176±0.02 0.081±0.01 0.132±0.03 0.063±0.04 6.391±2.65 0.051±0.04 3.098±1.96
ENSMUST00000136892 0.081±0.02 N/A N/A N/A 0.039±0.01 0.610±0.08 0.155±0.02 0.036±0.00 N/A 0.137±0.02 0.061±0.00 N/A N/A 2.567±0.00
ENSMUST00000140012 2.195±1.48 2.991±0.65 2.420±0.05 5.304±1.34 0.030±0.00 0.933±0.15 0.080±0.03 0.123±0.03 0.056±0.02 0.079±0.02 0.138±0.01 10.546±3.66 0.222±0.02 2.512±0.51
ENSMUST00000140126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.082±0.00 N/A N/A N/A
ENSMUST00000172566 N/A N/A N/A N/A N/A 1.206±0.00 N/A N/A N/A N/A N/A N/A 0.065±0.05 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A0 CIL_0008A0_0002 VISTA 8:123980149-124582109
CIL_000612 CIL_000612_0002 CGP 8:124231391-124439658
CIL_0007WK CIL_0007WK_0002 VISTA 8:124343702-124945898
CIL_00060Z CIL_00060Z_0002 CGP 8:124369049-124552008

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011042 pgbd5 piggyBac transposable element derived 5 protein_coding Danio_rerio
ENSG00000177614 PGBD5 piggyBac transposable element derived 5 protein_coding Homo_sapiens

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