C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA pseudouridylate synthase domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060634 Rpusd3-002 ENSMUSG00000051169 10090 - 6:113415329-113419319 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060634
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060634 3.614±1.59 2.058±0.49 1.273±0.07 1.493±0.51 2.729±0.55 3.641±0.57 1.625±0.48 6.770±1.29 2.942±1.49 1.806±0.00 1.657±0.72 2.380±0.89 3.180±1.88 1.175±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WY CIL_0002WY_0002 CGP 6:113389260-113419348
CIL_00059D CIL_00059D_0002 CGP 6:113415319-113435760

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0009982 IEA pseudouridine synthase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000383820 RPUSD3-001 protein_coding Homo_sapiens 0 667
ENST00000418713 RPUSD3-011 protein_coding Homo_sapiens 0 460
ENST00000423108 RPUSD3-006 protein_coding Homo_sapiens 0 217
ENST00000424438 RPUSD3-010 protein_coding Homo_sapiens 0 457
ENST00000427174 RPUSD3-009 protein_coding Homo_sapiens 0 470
ENST00000433535 RPUSD3-002 protein_coding Homo_sapiens 0 549
ENST00000464783 RPUSD3-007 retained_intron Homo_sapiens 0 340
ENST00000475470 RPUSD3-005 retained_intron Homo_sapiens 0 224
ENST00000484134 RPUSD3-003 retained_intron Homo_sapiens 6e-29 134

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