C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA pseudouridylate synthase domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113092 Rpusd3-001 ENSMUSG00000051169 10090 - 6:113415319-113419348 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113092
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113092 7.306±2.75 7.524±2.38 3.522±0.86 3.257±1.87 11.544±2.39 6.428±1.15 2.747±0.92 15.467±5.32 10.303±5.21 3.945±0.93 2.890±0.78 4.794±1.44 5.322±4.45 4.540±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WY CIL_0002WY_0002 CGP 6:113389260-113419348
CIL_00059D CIL_00059D_0002 CGP 6:113415319-113435760

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0005575 ND cellular_component
GO:0009982 IEA pseudouridine synthase activity
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000383820 RPUSD3-001 protein_coding Homo_sapiens 0 730
ENST00000418713 RPUSD3-011 protein_coding Homo_sapiens 0 460
ENST00000423108 RPUSD3-006 protein_coding Homo_sapiens 0 279
ENST00000424438 RPUSD3-010 protein_coding Homo_sapiens 0 457
ENST00000427174 RPUSD3-009 protein_coding Homo_sapiens 0 532
ENST00000433535 RPUSD3-002 protein_coding Homo_sapiens 0 612
ENST00000464783 RPUSD3-007 retained_intron Homo_sapiens 0 403
ENST00000475470 RPUSD3-005 retained_intron Homo_sapiens 0 224
ENST00000484134 RPUSD3-003 retained_intron Homo_sapiens 6e-29 134

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