C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 171
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000052407 Ccdc171 10090 + 4:83525545-83864670 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000053414 Ccdc171-001 83525545-83864670 protein_coding
  ENSMUST00000107202 Ccdc171-003 83549660-83558841 processed_transcript
  ENSMUST00000125077 Ccdc171-006 83525639-83864585 nonsense_mediated_decay
  ENSMUST00000126429 Ccdc171-002 83525614-83555378 protein_coding
  ENSMUST00000183729 Ccdc171-005 83695955-83798676 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053414ENSMUST00000107202ENSMUST00000125077ENSMUST00000126429ENSMUST00000183729
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053414 N/A 0.267±0.12 N/A 0.691±0.00 0.389±0.12 0.350±0.08 0.166±0.05 0.247±0.14 0.196±0.08 0.508±0.21 0.106±0.01 0.837±0.29 0.384±0.00 6.266±1.67
ENSMUST00000107202 N/A N/A N/A 0.261±0.00 0.689±0.00 0.430±0.00 N/A N/A N/A N/A N/A 0.816±0.00 N/A N/A
ENSMUST00000125077 0.290±0.00 N/A 0.460±0.00 0.421±0.00 0.268±0.02 N/A 0.088±0.00 0.138±0.03 0.223±0.06 N/A 0.116±0.04 0.475±0.38 0.284±0.15 5.497±4.56
ENSMUST00000126429 N/A 0.205±0.00 N/A N/A N/A 0.207±0.00 N/A N/A N/A N/A 0.077±0.00 N/A N/A N/A
ENSMUST00000183729 N/A 0.150±0.00 N/A 0.474±0.00 N/A N/A 0.186±0.00 N/A N/A 0.423±0.00 0.129±0.01 0.530±0.14 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051U CIL_00051U_0003 CGP 4:83455680-83864670
CIL_0007VI CIL_0007VI_0002 VISTA 4:83494853-84095171

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027381 CCDC171 coiled-coil domain containing 171 protein_coding Danio_rerio
ENSG00000164989 CCDC171 coiled-coil domain containing 171 protein_coding Homo_sapiens

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