C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Snf2-related CREBBP activator protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000053877 Srcap 10090 + 7:127511983-127567054 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000066582 Srcap-201 127512992-127536376 protein_coding
  ENSMUST00000084563 Srcap-202 127559386-127565266 protein_coding
  ENSMUST00000098025 Srcap-203 127512027-127525323 protein_coding
  ENSMUST00000185401 Srcap-002 127511983-127527040 retained_intron
  ENSMUST00000186672 Srcap-005 127512465-127539236 protein_coding
  ENSMUST00000186759 Srcap-011 127515993-127519969 retained_intron
  ENSMUST00000186954 Srcap-014 127516148-127560769 protein_coding
  ENSMUST00000187040 Srcap-001 127513018-127561219 protein_coding
  ENSMUST00000187164 Srcap-006 127512992-127536376 retained_intron
  ENSMUST00000187442 Srcap-010 127512112-127515413 processed_transcript
  ENSMUST00000188124 Srcap-003 127511983-127529322 protein_coding
  ENSMUST00000189136 Srcap-004 127512002-127522837 protein_coding
  ENSMUST00000189449 Srcap-008 127512301-127515996 processed_transcript
  ENSMUST00000189629 Srcap-009 127519584-127567054 nonsense_mediated_decay
  ENSMUST00000189812 Srcap-007 127533760-127535792 retained_intron
  ENSMUST00000190278 Srcap-012 127561579-127566940 processed_transcript
  ENSMUST00000190390 Srcap-013 127516148-127560769 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084563ENSMUST00000186954ENSMUST00000187040ENSMUST00000189629ENSMUST00000190390
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084563 9.738±1.06 16.759±2.29 9.937±1.39 7.532±0.18 15.570±0.00 13.807±1.34 N/A 8.965±1.40 5.114±1.06 10.548±0.55 N/A N/A 4.171±0.23 N/A
ENSMUST00000186954 N/A N/A 1.351±0.00 12.438±0.00 N/A N/A N/A N/A N/A N/A N/A 13.475±5.92 12.125±4.49 5.128±0.00
ENSMUST00000187040 3.135±1.40 7.293±2.70 2.692±0.00 6.384±3.96 2.709±0.00 3.491±0.46 3.073±0.93 3.332±1.00 1.590±0.38 3.249±1.44 3.343±0.98 8.543±1.17 3.673±2.88 2.038±0.00
ENSMUST00000189629 N/A N/A 1.152±0.01 1.686±0.00 1.287±0.00 N/A N/A N/A 1.012±0.26 N/A N/A 5.418±0.12 0.712±0.01 N/A
ENSMUST00000190390 6.376±2.08 8.913±2.61 2.808±0.36 7.053±3.27 10.057±4.40 6.159±1.47 3.546±0.40 6.205±1.22 2.919±0.99 9.235±1.46 2.699±0.97 12.199±4.27 5.767±3.00 8.169±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VJ CIL_0003VJ_0003 CGP 7:127485221-127567054
CIL_0001KJ CIL_0001KJ_0002 CGP 7:127511983-127583305

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005794 IEA Golgi apparatus
GO:0008150 ND biological_process
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005236 srcap Snf2-related CREBBP activator protein protein_coding Danio_rerio
ENSG00000080603 SRCAP Snf2-related CREBBP activator protein protein_coding Homo_sapiens

Loading