C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET nuclear oncogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149578 Set-003 ENSMUSG00000054766 10090 + 2:30061754-30069557 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaENSMUST00000149578
Transcript ID Ovary Placenta
ENSMUST00000149578 160.634±0.00 567.501±431.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LV CIL_0002LV_0003 CGP 2:30031546-30072577
CIL_0007EE CIL_0007EE_0002 CGP 2:30057378-30091022

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0006334 IEA nucleosome assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322030 SET-002 protein_coding Homo_sapiens 0 592
ENST00000372686 SET-010 protein_coding Homo_sapiens 0 590
ENST00000372688 SET-201 protein_coding Homo_sapiens 0 590
ENST00000372692 SET-001 protein_coding Homo_sapiens 0 627
ENST00000409104 SET-003 protein_coding Homo_sapiens 0 590
ENST00000412243 SETP22-001 processed_pseudogene Homo_sapiens 0 523
ENST00000412724 SETP15-001 processed_pseudogene Homo_sapiens 0 276
ENST00000423837 SETP9-001 transcribed_processed_pseudogene Homo_sapiens 0 422
ENST00000424368 SETP10-001 processed_pseudogene Homo_sapiens 0 420
ENST00000435341 SETP8-001 processed_pseudogene Homo_sapiens 0 261
ENST00000455717 SETP4-001 processed_pseudogene Homo_sapiens 0 544
ENST00000457046 SETP20-001 processed_pseudogene Homo_sapiens 0 514
ENST00000466009 SET-005 processed_transcript Homo_sapiens 0 202
ENST00000477806 SET-008 processed_transcript Homo_sapiens 0 588
ENST00000479329 SETP6-001 processed_pseudogene Homo_sapiens 0 409
ENST00000480217 SET-004 processed_transcript Homo_sapiens 0 592
ENST00000480536 SET-012 retained_intron Homo_sapiens 0 501
ENST00000485056 SET-011 retained_intron Homo_sapiens 0 243
ENST00000485873 SETSIP-001 protein_coding Homo_sapiens 0 603
ENST00000497538 SETP14-001 processed_pseudogene Homo_sapiens 0 608
ENST00000514799 SETP21-001 processed_pseudogene Homo_sapiens 0 525
ENST00000534163 SETP17-001 processed_pseudogene Homo_sapiens 0 411
ENST00000553886 SETP2-001 processed_pseudogene Homo_sapiens 0 472
ENST00000556014 SETP1-001 processed_pseudogene Homo_sapiens 0 451
ENST00000581726 SETP3-001 processed_pseudogene Homo_sapiens 0 547
ENST00000596516 SETSIP-201 protein_coding Homo_sapiens 0 604

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