C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hemicentin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113532 Hmcn2-001 ENSMUSG00000055632 10090 + 2:31314415-31460738 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENSMUST00000113532
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000113532 7.137±3.67 0.383±0.14 2.531±0.00 0.042±0.01 1.251±0.55 11.480±4.54 1.389±0.38 0.152±0.01 0.653±0.05 0.832±0.54 3.090±1.62 0.095±0.06 0.347±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000936 CIL_000936_0002 VISTA 2:31199311-31800827
CIL_0004XH CIL_0004XH_0002 CGP 2:31245823-31460738
CIL_0005UI CIL_0005UI_0002 CGP 2:31314415-31520672

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005576 IDA extracellular region
GO:0005604 IDA basement membrane
GO:0005938 IDA cell cortex
GO:0008150 ND biological_process
GO:0030054 IDA cell junction
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000480829 HMCN2-002 retained_intron Homo_sapiens 0 1040
ENST00000487727 HMCN2-003 nonsense_mediated_decay Homo_sapiens 0 1890
ENST00000611173 HMCN2-201 protein_coding Homo_sapiens 0 935
ENST00000623487 HMCN2-005 retained_intron Homo_sapiens 0 361
ENST00000624552 HMCN2-001 protein_coding Homo_sapiens 0 4610

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