C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ArfGAP with dual PH domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056413 Adap1 10090 - 5:139271876-139325622 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000110865 Adap1-001 139271876-139325622 protein_coding
  ENSMUST00000123748 Adap1-005 139272930-139274641 retained_intron
  ENSMUST00000126762 Adap1-002 139272858-139306291 processed_transcript
  ENSMUST00000151450 Adap1-003 139271876-139306319 processed_transcript
  ENSMUST00000156815 Adap1-004 139280522-139307809 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110865ENSMUST00000123748ENSMUST00000126762ENSMUST00000151450ENSMUST00000156815
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110865 15.811±5.27 2.560±0.79 19.621±3.52 17.877±6.19 8.777±2.72 11.075±2.99 0.787±0.25 10.972±2.47 1.185±0.90 3.281±0.95 0.516±0.17 1.371±0.50 4.083±1.89 0.329±0.00
ENSMUST00000123748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.502±0.00 1.541±0.34 N/A N/A
ENSMUST00000126762 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.407±0.00
ENSMUST00000151450 N/A 0.766±0.17 3.387±0.00 29.491±0.00 7.829±0.00 10.940±2.53 N/A 5.091±3.27 0.525±0.40 1.823±0.48 0.534±0.19 1.319±0.60 5.377±1.64 0.542±0.04
ENSMUST00000156815 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.685±0.00 0.919±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008V5 CIL_0008V5_0002 VISTA 5:139236245-139837428
CIL_0008DL CIL_0008DL_0002 VISTA 5:139238772-139840184
CIL_000186 CIL_000186_0002 CGP 5:139252324-139325622
CIL_000185 CIL_000185_0002 CGP 5:139271876-139345233

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005547 IEA phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043087 IEA regulation of GTPase activity
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086306 CABZ01073174.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000105963 ADAP1 ArfGAP with dual PH domains 1 protein_coding Homo_sapiens

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