C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: jumonji domain containing 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047616 Jmjd6-001 ENSMUSG00000056962 10090 - 11:116837432-116843449 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENSMUST00000047616
Transcript ID Placenta Testis
ENSMUST00000047616 54.793±0.00 30.558±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FJ CIL_0000FJ_0002 CGP 11:116803062-116843449
CIL_0003KF CIL_0003KF_0003 CGP 11:116837432-116854263

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001568 IMP blood vessel development
GO:0001822 IMP kidney development
GO:0002040 IMP sprouting angiogenesis
GO:0003727 ISS single-stranded RNA binding
GO:0004872 IDA receptor activity
GO:0005506 IEA iron ion binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 ISS nucleoplasm
GO:0005730 ISS nucleolus
GO:0005886 IDA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0007166 IDA cell surface receptor signaling pathway
GO:0007507 IMP heart development
GO:0008380 IEA RNA splicing
GO:0018395 ISS peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine
GO:0030324 IMP lung development
GO:0033077 IMP T cell differentiation in thymus
GO:0033746 ISS histone demethylase activity (H3-R2 specific)
GO:0033749 ISS histone demethylase activity (H4-R3 specific)
GO:0042116 IMP macrophage activation
GO:0042802 IEA identical protein binding
GO:0043277 IMP apoptotic cell clearance
GO:0043654 IDA recognition of apoptotic cell
GO:0048024 IMP regulation of mRNA splicing, via spliceosome
GO:0048821 IMP erythrocyte development
GO:0055114 IEA oxidation-reduction process
GO:0060041 IMP retina development in camera-type eye
GO:0070078 IEA histone H3-R2 demethylation
GO:0070079 IEA histone H4-R3 demethylation
GO:0070815 ISS peptidyl-lysine 5-dioxygenase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303996 JMJD6-003 nonsense_mediated_decay Homo_sapiens 0 1375
ENST00000397625 JMJD6-004 protein_coding Homo_sapiens 0 1585
ENST00000445478 JMJD6-001 protein_coding Homo_sapiens 0 1655
ENST00000542934 JMJD6-002 nonsense_mediated_decay Homo_sapiens 0 1375
ENST00000585429 JMJD6-005 protein_coding Homo_sapiens 0 1262
ENST00000589982 JMJD6-007 retained_intron Homo_sapiens 0 315
ENST00000591460 JMJD6-006 retained_intron Homo_sapiens 0 313
ENST00000617192 JMJD6-201 protein_coding Homo_sapiens 0 1375

Loading