C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L30
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000058600 Rpl30 10090 - 15:34440505-34443640 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000009039 Rpl30-002 34440510-34443222 protein_coding
  ENSMUST00000079735 Rpl30-001 34440505-34443640 protein_coding
  ENSMUST00000135417 Rpl30-003 34440505-34443160 retained_intron
  ENSMUST00000136653 Rpl30-006 34440575-34441665 retained_intron
  ENSMUST00000140527 Rpl30-004 34442521-34443259 processed_transcript
  ENSMUST00000142643 Rpl30-005 34440505-34442908 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000009039ENSMUST00000079735ENSMUST00000140527ENSMUST00000142643
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000009039 59.007±14.21 9.675±1.18 354.787±50.00 113.679±63.79 45.980±47.60 18.323±3.94 71.904±19.50 63.159±25.94 122.400±129.68 29.653±11.04 95.955±22.78 135.401±246.55 258.251±154.91 34.869±16.40
ENSMUST00000079735 12.120±2.30 11.413±1.43 N/A 30.584±0.00 8.883±4.23 8.251±2.48 5.571±0.00 5.799±0.59 95.045±107.39 5.074±0.37 127.410±22.03 7.464±1.63 N/A 57.896±33.39
ENSMUST00000140527 48.453±12.71 N/A 721.270±157.15 190.281±97.01 31.021±9.17 41.666±8.34 48.418±14.40 48.681±11.17 226.757±256.76 53.401±15.37 N/A 135.797±279.76 540.986±116.62 62.148±4.98
ENSMUST00000142643 N/A N/A 107.577±0.00 N/A 37.389±5.93 38.406±9.37 N/A 19.712±0.00 27.837±3.22 55.441±23.41 N/A 41.168±7.79 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KP CIL_0001KP_0002 CGP 15:34440505-34473892

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005925 IEA focal adhesion
GO:0006412 IEA translation
GO:0016020 IEA membrane
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035871 rpl30 ribosomal protein L30 protein_coding Danio_rerio
ENSG00000156482 RPL30 ribosomal protein L30 protein_coding Homo_sapiens

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