C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L30
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000156482 RPL30 9606 - 8:98024851-98046469 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000287038 RPL30-001 98041721-98045590 protein_coding
  ENST00000396070 RPL30-009 98041721-98045544 protein_coding
  ENST00000517489 RPL30-004 98042645-98045550 retained_intron
  ENST00000517805 RPL30-012 98042831-98044132 processed_transcript
  ENST00000518164 RPL30-002 98024851-98045548 processed_transcript
  ENST00000518850 RPL30-010 98041721-98045545 nonsense_mediated_decay
  ENST00000520998 RPL30-006 98044433-98045545 retained_intron
  ENST00000521112 RPL30-005 98044868-98045548 retained_intron
  ENST00000521291 RPL30-007 98041721-98045514 protein_coding
  ENST00000521534 RPL30-013 98041719-98043085 retained_intron
  ENST00000521726 RPL30-003 98041807-98046469 protein_coding
  ENST00000522156 RPL30-011 98043447-98044241 processed_transcript
  ENST00000523172 RPL30-008 98041800-98045546 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000287038ENST00000396070
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000287038 382.369±0.00 575.073±0.00 30.075±0.00 137.933±24.67 248.733±104.33 365.705±239.28 85.399±26.41 141.794±24.80 164.559±2.92 257.553±137.91 256.385±134.87 811.080±830.11 652.502±418.06 250.568±212.31
ENST00000396070 N/A N/A 17.139±0.00 N/A 55.999±0.00 N/A 70.025±0.00 22.718±0.00 N/A 143.225±108.15 56.284±0.00 336.998±0.00 225.717±0.00 107.870±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KV CIL_0001KV_0001 CGP 8:97775057-98036716
CIL_0001KP CIL_0001KP_0001 CGP 8:98024851-98093610

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035871 rpl30 ribosomal protein L30 protein_coding Danio_rerio
ENSMUSG00000058600 Rpl30 ribosomal protein L30 protein_coding Mus_musculus

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