C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L30
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000009039 Rpl30-002 ENSMUSG00000058600 10090 - 15:34440510-34443222 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000009039
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000009039 59.007±14.21 9.675±1.18 354.787±50.00 113.679±63.79 45.980±47.60 18.323±3.94 71.904±19.50 63.159±25.94 122.400±129.68 29.653±11.04 95.955±22.78 135.401±246.55 258.251±154.91 34.869±16.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KP CIL_0001KP_0002 CGP 15:34440505-34473892

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000052082 rpl30-001 protein_coding Danio_rerio 0 296
ENST00000287038 RPL30-001 protein_coding Homo_sapiens 0 580
ENST00000396070 RPL30-009 protein_coding Homo_sapiens 0 298
ENST00000414021 RPL30P2-001 processed_pseudogene Homo_sapiens 0 276
ENST00000418873 RPL30P13-001 processed_pseudogene Homo_sapiens 0 366
ENST00000419341 RPL30P16-001 processed_pseudogene Homo_sapiens 0 233
ENST00000429309 RPL30P4-001 processed_pseudogene Homo_sapiens 0 435
ENST00000457129 RPL30P15-001 processed_pseudogene Homo_sapiens 0 335
ENST00000479312 RPL30P7-001 processed_pseudogene Homo_sapiens 0 202
ENST00000480085 RP1-249H1.3-001 processed_pseudogene Homo_sapiens 0 381
ENST00000482744 RPL30P14-001 processed_pseudogene Homo_sapiens 0 449
ENST00000517489 RPL30-004 retained_intron Homo_sapiens 0 425
ENST00000518164 RPL30-002 processed_transcript Homo_sapiens 0 298
ENST00000518850 RPL30-010 nonsense_mediated_decay Homo_sapiens 0 303
ENST00000520998 RPL30-006 retained_intron Homo_sapiens 0 303
ENST00000521112 RPL30-005 retained_intron Homo_sapiens 0 222
ENST00000521291 RPL30-007 protein_coding Homo_sapiens 0 593
ENST00000521534 RPL30-013 retained_intron Homo_sapiens 0 287
ENST00000521726 RPL30-003 protein_coding Homo_sapiens 0 571
ENST00000523172 RPL30-008 protein_coding Homo_sapiens 0 283

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