C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L30
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079735 Rpl30-001 ENSMUSG00000058600 10090 - 15:34440505-34443640 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000079735
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000079735 12.120±2.30 11.413±1.43 30.584±0.00 8.883±4.23 8.251±2.48 5.571±0.00 5.799±0.59 95.045±107.39 5.074±0.37 127.410±22.03 7.464±1.63 57.896±33.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KP CIL_0001KP_0002 CGP 15:34440505-34473892

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005925 IEA focal adhesion
GO:0006412 IEA translation
GO:0016020 IEA membrane
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000052082 rpl30-001 protein_coding Danio_rerio 0 296
ENST00000287038 RPL30-001 protein_coding Homo_sapiens 0 667
ENST00000396070 RPL30-009 protein_coding Homo_sapiens 0 348
ENST00000414021 RPL30P2-001 processed_pseudogene Homo_sapiens 0 276
ENST00000418873 RPL30P13-001 processed_pseudogene Homo_sapiens 0 366
ENST00000419341 RPL30P16-001 processed_pseudogene Homo_sapiens 0 233
ENST00000429309 RPL30P4-001 processed_pseudogene Homo_sapiens 0 435
ENST00000457129 RPL30P15-001 processed_pseudogene Homo_sapiens 0 335
ENST00000479312 RPL30P7-001 processed_pseudogene Homo_sapiens 0 202
ENST00000480085 RP1-249H1.3-001 processed_pseudogene Homo_sapiens 0 381
ENST00000482744 RPL30P14-001 processed_pseudogene Homo_sapiens 0 449
ENST00000517489 RPL30-004 retained_intron Homo_sapiens 0 425
ENST00000518164 RPL30-002 processed_transcript Homo_sapiens 0 353
ENST00000518850 RPL30-010 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000520998 RPL30-006 retained_intron Homo_sapiens 0 355
ENST00000521112 RPL30-005 retained_intron Homo_sapiens 0 222
ENST00000521291 RPL30-007 protein_coding Homo_sapiens 0 580
ENST00000521534 RPL30-013 retained_intron Homo_sapiens 0 287
ENST00000521726 RPL30-003 protein_coding Homo_sapiens 0 569
ENST00000523172 RPL30-008 protein_coding Homo_sapiens 0 283

Loading