C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NK2 homeobox 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000058669 Nkx2-9 10090 - 12:56611389-56613284 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000072631 Nkx2-9-001 56611389-56613284 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartLiverOvaryPlacentaTestisENSMUST00000072631
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Liver Ovary Placenta Testis
ENSMUST00000072631 0.079±0.08 0.214±0.11 0.024±0.02 0.104±0.05 0.060±0.02 0.063±0.03 0.037±0.02 0.159±0.07 0.044±0.01 0.108±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LS CIL_0007LS_0003 UCNEbase 12:55566857-57467023
CIL_00092P CIL_00092P_0002 VISTA 12:56086861-56688474
CIL_0008XR CIL_0008XR_0002 VISTA 12:56140796-56741827
CIL_0008R1 CIL_0008R1_0002 VISTA 12:56154748-56756277
CIL_00091S CIL_00091S_0002 VISTA 12:56158078-56760488
CIL_0007TC CIL_0007TC_0002 VISTA 12:56181967-56783344
CIL_0007XY CIL_0007XY_0002 VISTA 12:56220183-56821029
CIL_0000SP CIL_0000SP_0002 CGP 12:56531958-56613284
CIL_00045C CIL_00045C_0002 CGP 12:56611389-56712822

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0007409 IMP axonogenesis
GO:0030323 IMP respiratory tube development
GO:0030324 IMP lung development
GO:0043565 IEA sequence-specific DNA binding
GO:0050680 IMP negative regulation of epithelial cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052550 nkx2.2b NK2 transcription factor related 2b protein_coding Danio_rerio
ENSG00000136327 NKX2-8 NK2 homeobox 8 protein_coding Homo_sapiens

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