C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NK2 homeobox 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072631 Nkx2-9-001 ENSMUSG00000058669 10090 - 12:56611389-56613284 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartLiverOvaryPlacentaTestisENSMUST00000072631
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Liver Ovary Placenta Testis
ENSMUST00000072631 0.079±0.08 0.214±0.11 0.024±0.02 0.104±0.05 0.060±0.02 0.063±0.03 0.037±0.02 0.159±0.07 0.044±0.01 0.108±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LS CIL_0007LS_0003 UCNEbase 12:55566857-57467023
CIL_00092P CIL_00092P_0002 VISTA 12:56086861-56688474
CIL_0008XR CIL_0008XR_0002 VISTA 12:56140796-56741827
CIL_0008R1 CIL_0008R1_0002 VISTA 12:56154748-56756277
CIL_00091S CIL_00091S_0002 VISTA 12:56158078-56760488
CIL_0007TC CIL_0007TC_0002 VISTA 12:56181967-56783344
CIL_0007XY CIL_0007XY_0002 VISTA 12:56220183-56821029
CIL_0000SP CIL_0000SP_0002 CGP 12:56531958-56613284
CIL_00045C CIL_00045C_0002 CGP 12:56611389-56712822

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0007409 IMP axonogenesis
GO:0030323 IMP respiratory tube development
GO:0030324 IMP lung development
GO:0043565 IEA sequence-specific DNA binding
GO:0050680 IMP negative regulation of epithelial cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000005296 nkx2.9-001 protein_coding Danio_rerio 5e-32 143
ENSDART00000007829 nkx2.1a-001 protein_coding Danio_rerio 1e-17 95
ENSDART00000153363 protein_coding Danio_rerio 0.00008 53
ENST00000258829 NKX2-8-001 protein_coding Homo_sapiens 0 643
ENST00000325017 NKX2-6-001 protein_coding Homo_sapiens 3e-23 113
ENST00000329198 NKX2-5-001 protein_coding Homo_sapiens 1e-29 135
ENST00000351817 NKX2-4-001 protein_coding Homo_sapiens 2e-28 132
ENST00000354822 NKX2-1-002 protein_coding Homo_sapiens 2e-28 132
ENST00000357878 HMX3-001 protein_coding Homo_sapiens 0.000000003 68
ENST00000377142 NKX2-2-001 protein_coding Homo_sapiens 0 220
ENST00000424406 NKX2-5-003 protein_coding Homo_sapiens 7e-30 135
ENST00000498187 NKX2-1-001 protein_coding Homo_sapiens 2e-28 132
ENST00000518149 NKX2-1-004 protein_coding Homo_sapiens 2e-28 132
ENST00000521848 NKX2-5-004 protein_coding Homo_sapiens 6e-30 135
ENST00000522719 NKX2-1-003 protein_coding Homo_sapiens 1e-28 132

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