C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000SP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136352-ENSG00000136327 CGP 9606 14:36516392-36582607
GeneTranscriptPositionBiotype
ENSG00000136327 (NKX2-8)
NK2 homeobox 8 		ENST00000258829 (NKX2-8-001) 36580579-36582607 protein_coding
ENSG00000136352 (NKX2-1)
NK2 homeobox 1 		ENST00000354822 (NKX2-1-002) 36516392-36520228 protein_coding
ENST00000498187 (NKX2-1-001) 36516392-36519693 protein_coding
ENST00000518149 (NKX2-1-004) 36516417-36521149 protein_coding
ENST00000522719 (NKX2-1-003) 36517217-36520134 protein_coding
ENST00000546983 (NKX2-1-005) 36519587-36520949 protein_coding
ENSG00000243730 (RPL29P3)
ribosomal protein L29 pseudogene 3 		ENST00000486611 (RPL29P3-001) 36577543-36578005 processed_pseudogene
ENSG00000253563 (NKX2-1-AS1)
NKX2-1 antisense RNA 1 		ENST00000521292 (NKX2-1-AS1-001) 36519278-36523016 antisense
ENSG00000258467 (PHKBP2)
phosphorylase kinase, beta pseudogene 2 		ENST00000555180 (PHKBP2-001) 36533506-36534538 unprocessed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0000SP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000001496-ENSMUSG00000058669 CGP 10090 12:56531958-56613284
GeneTranscriptPositionBiotype
ENSMUSG00000001496 (Nkx2-1)
NK2 homeobox 1 		ENSMUST00000001536 (Nkx2-1-002) 56531958-56536908 protein_coding
ENSMUST00000178477 (Nkx2-1-001) 56531958-56535106 protein_coding
ENSMUSG00000058669 (Nkx2-9)
NK2 homeobox 9 		ENSMUST00000072631 (Nkx2-9-001) 56611389-56613284 protein_coding
ENSMUSG00000092515 (C87198)
expressed sequence C87198 		ENSMUST00000173553 (C87198-001) 56591059-56594996 sense_intronic
ENSMUST00000182261 (C87198-002) 56591069-56594532 sense_intronic
ENSMUSG00000098172 (Gm26973)
predicted gene, 26973 		ENSMUST00000182105 (Gm26973-002) 56537416-56607476 antisense
ENSMUST00000182733 (Gm26973-001) 56535343-56607439 antisense
ENSMUST00000183231 (Gm26973-003) 56537365-56567383 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000SP_0001ENSG00000136327ENST00000258829ENSG00000136352ENST00000354822ENST00000498187ENST00000518149ENST00000522719ENST00000546983ENSG00000243730ENST00000486611ENSG00000253563ENST00000521292ENSG00000258467ENST00000555180CIL_0000SP_0002ENSMUSG00000001496ENSMUST00000001536ENSMUST00000178477ENSMUSG00000058669ENSMUST00000072631ENSMUSG00000092515ENSMUST00000173553ENSMUST00000182261ENSMUSG00000098172ENSMUST00000182105ENSMUST00000182733ENSMUST00000183231
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000SP_0001ENSG00000136327ENST00000258829ENSG00000136352ENST00000354822ENST00000522719ENSG00000243730ENST00000486611ENSG00000253563ENST00000521292ENSG00000258467ENST00000555180CIL_0000SP_0002ENSMUSG00000001496ENSMUST00000001536ENSMUST00000178477ENSMUSG00000058669ENSMUST00000072631ENSMUSG00000092515ENSMUST00000173553ENSMUST00000182261ENSMUSG00000098172ENSMUST00000182105ENSMUST00000182733ENSMUST00000183231
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136327 ENST00000258829 N/A N/A N/A 0.098±0.00 0.041±0.00 N/A N/A N/A N/A 0.739±0.00 N/A 0.110±0.02 N/A 2.845±0.90
ENSG00000136352 ENST00000354822 N/A 0.023±0.00 N/A 0.016±0.00 N/A N/A 0.013±0.00 N/A N/A 16.061±8.89 N/A 0.250±0.21 N/A 0.051±0.00
ENST00000498187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.142±0.00
ENST00000546983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000243730 ENST00000486611 0.039±0.00 N/A N/A 0.045±0.00 0.044±0.00 0.040±0.00 N/A 0.084±0.00 N/A 0.122±0.00 0.109±0.00 N/A N/A N/A
ENSG00000253563 ENST00000521292 N/A N/A N/A 0.055±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.131±0.00
ENSG00000258467 ENST00000555180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.054±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001496 ENSMUST00000001536 N/A N/A N/A 2.319±1.99 N/A N/A 0.069±0.04 N/A 0.024±0.00 N/A N/A N/A N/A N/A
ENSMUST00000178477 0.035±0.02 0.033±0.02 0.168±0.03 10.010±7.98 0.055±0.03 0.030±0.00 0.218±0.13 0.025±0.01 0.111±0.13 130.076±41.99 0.026±0.01 0.212±0.08 0.085±0.04 0.044±0.03
ENSMUSG00000058669 ENSMUST00000072631 0.079±0.08 0.214±0.11 0.024±0.02 0.104±0.05 N/A 0.060±0.02 0.063±0.03 N/A 0.037±0.02 N/A N/A 0.159±0.07 0.044±0.01 0.108±0.07
ENSMUSG00000092515 ENSMUST00000173553 N/A N/A N/A 0.033±0.02 N/A N/A 0.022±0.00 N/A 0.010±0.00 0.371±0.06 N/A 0.081±0.04 0.005±0.00 N/A
ENSMUST00000182261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.087±0.04 N/A N/A
ENSMUSG00000098172 ENSMUST00000182105 N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A N/A 0.458±0.00 N/A 0.143±0.00 N/A N/A
ENSMUST00000182733 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.043±0.34 N/A N/A N/A N/A
ENSMUST00000183231 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.339±0.07 N/A N/A N/A N/A

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