C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAD51 homolog B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000059060 Rad51b 10090 + 12:79297351-79508656 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000079533 Rad51b-201 79297351-79508656 protein_coding
  ENSMUST00000171210 Rad51b-202 79297351-79327463 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079533ENSMUST00000171210
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079533 N/A N/A 0.057±0.02 0.023±0.00 0.124±0.05 0.079±0.03 0.059±0.02 N/A 0.151±0.07 0.115±0.04 0.032±0.00 0.223±0.05 0.137±0.07 0.259±0.07
ENSMUST00000171210 0.142±0.09 0.239±0.09 N/A 0.218±0.12 0.229±0.15 0.372±0.21 0.092±0.02 0.052±0.00 1.472±0.87 N/A 0.130±0.09 0.805±0.32 1.022±0.41 0.207±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083I CIL_00083I_0002 VISTA 12:79205602-79809359
CIL_0002CJ CIL_0002CJ_0002 CGP 12:79232347-79508656
CIL_00086O CIL_00086O_0002 VISTA 12:79235235-79836539
CIL_0001JV CIL_0001JV_0003 CGP 12:79297351-80113013

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000400 IEA four-way junction DNA binding
GO:0000724 ISS double-strand break repair via homologous recombination
GO:0003677 IEA DNA binding
GO:0003690 ISS double-stranded DNA binding
GO:0003697 ISS single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005657 ISS replication fork
GO:0006200 IEA ATP catabolic process
GO:0006259 IEA DNA metabolic process
GO:0008094 IEA DNA-dependent ATPase activity
GO:0010971 ISS positive regulation of G2/M transition of mitotic cell cycle
GO:0033063 ISS Rad51B-Rad51C-Rad51D-XRCC2 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037046 rad51b RAD51 homolog B (S. cerevisiae) protein_coding Danio_rerio
ENSG00000182185 RAD51B RAD51 paralog B protein_coding Homo_sapiens

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