C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002CJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000072121-ENSG00000182185 CGP 9606 14:67727374-68730218
GeneTranscriptPositionBiotype
ENSG00000072121 (ZFYVE26)
zinc finger, FYVE domain containing 26 		ENST00000347230 (ZFYVE26-001) 67746520-67816589 protein_coding
ENST00000394455 (ZFYVE26-009) 67727374-67770477 retained_intron
ENST00000553399 (ZFYVE26-010) 67815529-67816590 retained_intron
ENST00000554523 (ZFYVE26-004) 67748229-67816587 retained_intron
ENST00000554557 (ZFYVE26-007) 67748033-67816580 nonsense_mediated_decay
ENST00000554783 (ZFYVE26-012) 67753711-67756421 retained_intron
ENST00000555452 (ZFYVE26-002) 67760782-67816587 protein_coding
ENST00000557204 (ZFYVE26-011) 67777584-67778327 retained_intron
ENST00000557306 (ZFYVE26-008) 67750473-67761491 protein_coding
ENST00000557366 (ZFYVE26-006) 67796221-67816585 retained_intron
ENST00000557407 (ZFYVE26-005) 67797320-67816585 retained_intron
ENSG00000139988 (RDH12)
retinol dehydrogenase 12 (all-trans/9-cis/11-cis) 		ENST00000267502 (RDH12-201) 67720842-67734450 protein_coding
ENST00000547463 (RDH12-003) 67717806-67720899 processed_transcript
ENST00000551171 (RDH12-001) 67701886-67734452 protein_coding
ENST00000552873 (RDH12-002) 67727164-67729746 retained_intron
ENSG00000182185 (RAD51B)
RAD51 paralog B 		ENST00000390683 (RAD51B-201) 67819812-67887326 protein_coding
ENST00000460526 (RAD51B-011) 67887130-68497562 processed_transcript
ENST00000468382 (RAD51B-013) 67908305-68468250 processed_transcript
ENST00000469165 (RAD51B-010) 67887130-68497881 processed_transcript
ENST00000471583 (RAD51B-003) 67819808-68478099 protein_coding
ENST00000474051 (RAD51B-007) 67885733-67887550 retained_intron
ENST00000478014 (RAD51B-012) 67887102-68683171 processed_transcript
ENST00000479335 (RAD51B-002) 67819779-68478051 nonsense_mediated_decay
ENST00000485181 (RAD51B-006) 67822165-67865087 protein_coding
ENST00000487270 (RAD51B-004) 67819808-68595996 protein_coding
ENST00000487861 (RAD51B-001) 67819779-68611565 protein_coding
ENST00000488612 (RAD51B-005) 67819829-68730218 protein_coding
ENST00000492236 (RAD51B-008) 67886756-68411457 processed_transcript
ENST00000497460 (RAD51B-009) 67886598-68540249 processed_transcript
ENST00000553334 (RAD51B-014) 67823520-67835106 protein_coding
ENST00000553595 (RAD51B-017) 67865032-68683118 processed_transcript
ENST00000553734 (RAD51B-015) 67843433-67887150 processed_transcript
ENST00000554183 (RAD51B-020) 68387137-68497451 processed_transcript
ENST00000554244 (RAD51B-018) 67887067-68683118 processed_transcript
ENST00000554575 (RAD51B-021) 68411510-68470717 protein_coding
ENST00000555782 (RAD51B-022) 68472033-68478101 processed_transcript
ENST00000555907 (RAD51B-016) 67857892-67887212 processed_transcript
ENST00000556251 (RAD51B-023) 68545562-68594988 processed_transcript
ENST00000557045 (RAD51B-019) 68000279-68497257 processed_transcript
ENSG00000239820 (RN7SL213P)
RNA, 7SL, cytoplasmic 213, pseudogene 		ENST00000463482 (RN7SL213P-201) 67751228-67751544 misc_RNA
ENSG00000240210 (RP11-204K16.1)
 ENST00000473054 (RP11-204K16.1-001) 68338728-68339528 processed_pseudogene
ENSG00000242941 (CTD-2325P2.2)
 ENST00000493832 (CTD-2325P2.2-001) 68693090-68693583 processed_pseudogene
ENSG00000243546 (RN7SL108P)
RNA, 7SL, cytoplasmic 108, pseudogene 		ENST00000481903 (RN7SL108P-201) 68236243-68236539 misc_RNA
ENSG00000244677 (RN7SL706P)
RNA, 7SL, cytoplasmic 706, pseudogene 		ENST00000460079 (RN7SL706P-201) 68149617-68149908 misc_RNA
ENSG00000258477 (PPIAP6)
peptidylprolyl isomerase A (cyclophilin A) pseudogene 6 		ENST00000557078 (PPIAP6-001) 68421698-68422196 processed_pseudogene
ENSG00000258623 (CTD-2325P2.3)
 ENST00000556919 (CTD-2325P2.3-001) 68683411-68685565 antisense
ENSG00000258759 (RP11-1012A1.7)
 ENST00000557141 (RP11-1012A1.7-001) 67799004-67799609 processed_pseudogene
ENSG00000258837 (CTD-2566J3.1)
 ENST00000554679 (CTD-2566J3.1-001) 68125004-68130196 antisense
ENSG00000259038 (CTD-2325P2.4)
 ENST00000556301 (CTD-2325P2.4-001) 68627166-68628445 antisense
ENSG00000271697 (RP11-1012A1.10)
 ENST00000604500 (RP11-1012A1.10-001) 67735195-67735350 processed_pseudogene
ENSG00000274666 (CTD-2566J3.2)
 ENST00000619934 (CTD-2566J3.2-001) 68113706-68114144 unprocessed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0002CJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000066440-ENSMUSG00000059060 CGP 10090 12:79232347-79508656
GeneTranscriptPositionBiotype
ENSMUSG00000059060 (Rad51b)
RAD51 homolog B 		ENSMUST00000079533 (Rad51b-201) 79297351-79508656 protein_coding
ENSMUST00000171210 (Rad51b-202) 79297351-79327463 protein_coding
ENSMUSG00000066440 (Zfyve26)
zinc finger, FYVE domain containing 26 		ENSMUST00000021547 (Zfyve26-201) 79232347-79296282 protein_coding

Mus musculus Ensembl (GRCm38)

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002CJ_0001ENSG00000072121ENST00000347230ENST00000394455ENST00000554523ENST00000554557ENST00000555452ENST00000557407ENSG00000139988ENST00000267502ENSG00000182185ENST00000390683ENST00000460526ENST00000468382ENST00000469165ENST00000471583ENST00000474051ENST00000478014ENST00000485181ENST00000487270ENST00000487861ENST00000488612ENST00000553334ENST00000553595ENST00000554183ENST00000554575ENST00000555782ENST00000556251ENSG00000239820ENST00000463482ENSG00000240210ENST00000473054ENSG00000242941ENST00000493832ENSG00000243546ENST00000481903ENSG00000244677ENST00000460079ENSG00000258477ENST00000557078ENSG00000258623ENST00000556919ENSG00000258759ENST00000557141ENSG00000258837ENST00000554679ENSG00000259038ENST00000556301ENSG00000271697ENST00000604500ENSG00000274666ENST00000619934CIL_0002CJ_0002ENSMUSG00000059060ENSMUST00000079533ENSMUST00000171210ENSMUSG00000066440ENSMUST00000021547
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000072121 ENST00000347230 1.447±0.00 1.037±0.00 0.941±0.00 1.034±0.19 1.367±0.42 1.055±0.62 1.390±1.12 0.559±0.00 0.927±0.28 1.420±0.50 1.065±0.17 1.299±0.52 1.325±0.63 1.286±0.01
ENST00000394455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.740±0.00 N/A N/A
ENST00000553399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554523 N/A N/A 0.285±0.00 N/A N/A N/A N/A N/A 0.571±0.00 1.341±0.00 N/A N/A N/A N/A
ENST00000554557 N/A 0.941±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555452 N/A 0.809±0.00 N/A 0.464±0.00 0.790±0.14 N/A 0.405±0.00 N/A N/A 0.969±0.00 0.741±0.00 1.215±0.00 N/A N/A
ENST00000557204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.299±0.00 N/A N/A N/A
ENSG00000139988 ENST00000267502 N/A N/A 1.888±0.00 N/A N/A N/A N/A N/A 3.732±0.00 N/A N/A N/A N/A N/A
ENST00000547463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000182185 ENST00000390683 N/A N/A N/A N/A N/A N/A 0.367±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000460526 N/A N/A N/A N/A N/A N/A N/A 0.369±0.00 N/A N/A N/A 1.307±0.00 0.680±0.00 N/A
ENST00000468382 N/A N/A N/A N/A N/A N/A N/A 0.188±0.00 1.683±0.00 N/A N/A 2.294±0.00 N/A N/A
ENST00000469165 N/A N/A N/A N/A 0.525±0.00 0.332±0.00 N/A 0.383±0.00 N/A 0.458±0.00 N/A N/A 0.341±0.00 0.621±0.32
ENST00000471583 N/A N/A N/A 0.224±0.00 N/A N/A 0.102±0.00 0.278±0.00 N/A 1.077±0.83 N/A 0.780±0.00 N/A 0.154±0.00
ENST00000474051 N/A N/A N/A N/A N/A N/A N/A 0.313±0.00 N/A N/A N/A N/A N/A N/A
ENST00000478014 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.885±0.00 N/A N/A N/A N/A
ENST00000479335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.141±0.00 N/A N/A N/A
ENST00000487270 N/A 0.311±0.00 N/A 0.118±0.02 N/A N/A 0.073±0.00 0.106±0.00 0.198±0.17 N/A N/A 1.234±0.20 0.349±0.00 0.250±0.00
ENST00000487861 N/A N/A N/A 0.212±0.00 N/A 0.500±0.00 0.059±0.00 N/A N/A 0.276±0.00 N/A N/A 0.348±0.01 0.193±0.00
ENST00000488612 0.224±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.625±0.09 N/A
ENST00000492236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553334 2.112±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.568±0.00
ENST00000553595 N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A N/A N/A N/A N/A
ENST00000553734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554183 N/A N/A N/A N/A N/A N/A 0.207±0.00 N/A 0.092±0.00 N/A N/A N/A 1.258±0.00 N/A
ENST00000554244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554575 N/A N/A N/A 2.138±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555782 N/A N/A N/A N/A N/A 2.647±0.00 N/A N/A 0.098±0.00 N/A N/A 1.512±0.00 N/A 0.663±0.00
ENST00000555907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556251 N/A N/A N/A N/A N/A N/A 0.448±0.00 N/A N/A N/A 0.462±0.00 N/A N/A N/A
ENST00000557045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000239820 ENST00000463482 N/A N/A N/A N/A N/A N/A N/A 0.049±0.00 0.292±0.00 0.147±0.00 N/A 0.154±0.00 N/A N/A
ENSG00000240210 ENST00000473054 0.082±0.00 0.132±0.00 N/A 0.072±0.00 0.093±0.00 0.064±0.00 0.020±0.00 0.045±0.00 0.059±0.00 0.043±0.00 0.134±0.00 0.029±0.00 N/A 0.119±0.00
ENSG00000242941 ENST00000493832 N/A N/A 0.183±0.00 N/A N/A N/A N/A 0.131±0.00 N/A N/A N/A 0.434±0.15 N/A 0.221±0.00
ENSG00000243546 ENST00000481903 N/A 0.167±0.00 N/A N/A 0.229±0.00 N/A N/A 0.057±0.00 0.317±0.00 0.053±0.00 N/A 0.267±0.00 N/A N/A
ENSG00000244677 ENST00000460079 N/A N/A N/A N/A 1.801±0.00 N/A N/A N/A 0.729±0.00 N/A N/A N/A N/A N/A
ENSG00000258477 ENST00000557078 N/A 0.064±0.00 N/A N/A 1.124±0.00 0.030±0.00 0.028±0.00 0.159±0.00 0.389±0.00 0.030±0.00 0.055±0.00 0.127±0.00 N/A 0.058±0.00
ENSG00000258623 ENST00000556919 0.087±0.00 0.547±0.00 N/A 0.158±0.00 0.390±0.00 N/A 0.130±0.00 N/A 0.083±0.00 0.090±0.00 N/A 0.163±0.04 0.382±0.11 0.212±0.00
ENSG00000258759 ENST00000557141 N/A N/A 0.250±0.00 N/A N/A 0.098±0.00 N/A 0.065±0.00 N/A N/A N/A 0.066±0.03 N/A 0.051±0.00
ENSG00000258837 ENST00000554679 N/A N/A 0.521±0.00 N/A 0.040±0.00 0.597±0.13 N/A 0.162±0.00 N/A N/A N/A 0.092±0.04 N/A 0.050±0.00
ENSG00000259038 ENST00000556301 0.231±0.00 N/A N/A 2.848±0.26 0.585±0.00 0.690±0.00 N/A 0.082±0.00 0.900±0.69 2.173±0.00 N/A 1.683±0.00 0.818±0.20 0.590±0.00
ENSG00000271697 ENST00000604500 0.326±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000274666 ENST00000619934 N/A N/A 0.191±0.00 0.835±0.00 1.003±0.00 0.385±0.00 0.163±0.00 N/A N/A 0.110±0.00 N/A 0.113±0.02 0.134±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000059060 ENSMUST00000079533 N/A N/A 0.057±0.02 0.023±0.00 0.124±0.05 0.079±0.03 0.059±0.02 N/A 0.151±0.07 0.115±0.04 0.032±0.00 0.223±0.05 0.137±0.07 0.259±0.07
ENSMUST00000171210 0.142±0.09 0.239±0.09 N/A 0.218±0.12 0.229±0.15 0.372±0.21 0.092±0.02 0.052±0.00 1.472±0.87 N/A 0.130±0.09 0.805±0.32 1.022±0.41 0.207±0.04
ENSMUSG00000066440 ENSMUST00000021547 4.374±0.74 3.150±0.49 3.065±0.10 1.573±0.69 4.242±2.01 2.711±0.75 1.510±0.27 3.341±0.71 2.729±0.68 4.055±0.34 2.041±0.22 4.438±1.01 7.576±3.71 2.214±0.56

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