C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD51 homolog B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171210 Rad51b-202 ENSMUSG00000059060 10090 + 12:79297351-79327463 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000171210
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000171210 0.142±0.09 0.239±0.09 0.218±0.12 0.229±0.15 0.372±0.21 0.092±0.02 0.052±0.00 1.472±0.87 0.130±0.09 0.805±0.32 1.022±0.41 0.207±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083I CIL_00083I_0002 VISTA 12:79205602-79809359
CIL_0002CJ CIL_0002CJ_0002 CGP 12:79232347-79508656
CIL_00086O CIL_00086O_0002 VISTA 12:79235235-79836539
CIL_0001JV CIL_0001JV_0003 CGP 12:79297351-80113013

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0006259 IEA DNA metabolic process
GO:0008094 IEA DNA-dependent ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000390683 RAD51B-201 protein_coding Homo_sapiens 0 741
ENST00000471583 RAD51B-003 protein_coding Homo_sapiens 0 732
ENST00000474051 RAD51B-007 retained_intron Homo_sapiens 0 285
ENST00000479335 RAD51B-002 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000485181 RAD51B-006 protein_coding Homo_sapiens 0 392
ENST00000487270 RAD51B-004 protein_coding Homo_sapiens 0 732
ENST00000487861 RAD51B-001 protein_coding Homo_sapiens 0 732
ENST00000488612 RAD51B-005 protein_coding Homo_sapiens 0 732
ENST00000492236 RAD51B-008 processed_transcript Homo_sapiens 2e-40 169
ENST00000497460 RAD51B-009 processed_transcript Homo_sapiens 3.00004e-41 172
ENST00000553595 RAD51B-017 processed_transcript Homo_sapiens 0 399
ENST00000553734 RAD51B-015 processed_transcript Homo_sapiens 0 412
ENST00000554244 RAD51B-018 processed_transcript Homo_sapiens 5e-29 132
ENST00000555907 RAD51B-016 processed_transcript Homo_sapiens 0 460

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