C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD51 homolog B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079533 Rad51b-201 ENSMUSG00000059060 10090 + 12:79297351-79508656 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000079533
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079533 0.057±0.02 0.023±0.00 0.124±0.05 0.079±0.03 0.059±0.02 0.151±0.07 0.115±0.04 0.032±0.00 0.223±0.05 0.137±0.07 0.259±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083I CIL_00083I_0002 VISTA 12:79205602-79809359
CIL_0002CJ CIL_0002CJ_0002 CGP 12:79232347-79508656
CIL_00086O CIL_00086O_0002 VISTA 12:79235235-79836539
CIL_0001JV CIL_0001JV_0003 CGP 12:79297351-80113013

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000400 IEA four-way junction DNA binding
GO:0000724 ISS double-strand break repair via homologous recombination
GO:0003690 ISS double-stranded DNA binding
GO:0003697 ISS single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005657 ISS replication fork
GO:0006200 IEA ATP catabolic process
GO:0008094 IEA DNA-dependent ATPase activity
GO:0010971 ISS positive regulation of G2/M transition of mitotic cell cycle
GO:0033063 ISS Rad51B-Rad51C-Rad51D-XRCC2 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000390683 RAD51B-201 protein_coding Homo_sapiens 0 732
ENST00000471583 RAD51B-003 protein_coding Homo_sapiens 0 736
ENST00000474051 RAD51B-007 retained_intron Homo_sapiens 0 276
ENST00000479335 RAD51B-002 nonsense_mediated_decay Homo_sapiens 0 455
ENST00000485181 RAD51B-006 protein_coding Homo_sapiens 0 392
ENST00000487270 RAD51B-004 protein_coding Homo_sapiens 0 736
ENST00000487861 RAD51B-001 protein_coding Homo_sapiens 0 736
ENST00000488612 RAD51B-005 protein_coding Homo_sapiens 0 736
ENST00000492236 RAD51B-008 processed_transcript Homo_sapiens 1.99993e-41 172
ENST00000497460 RAD51B-009 processed_transcript Homo_sapiens 1.99965e-42 176
ENST00000553595 RAD51B-017 processed_transcript Homo_sapiens 0 403
ENST00000553734 RAD51B-015 processed_transcript Homo_sapiens 0 412
ENST00000554244 RAD51B-018 processed_transcript Homo_sapiens 4e-30 135
ENST00000555907 RAD51B-016 processed_transcript Homo_sapiens 0 451

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