C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00083I_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1474 VISTA 9606 14:67838982-68441740
GeneTranscriptPositionBiotype
ENSG00000240210 (RP11-204K16.1)
 ENST00000473054 (RP11-204K16.1-001) 68338728-68339528 processed_pseudogene
ENSG00000243546 (RN7SL108P)
RNA, 7SL, cytoplasmic 108, pseudogene 		ENST00000481903 (RN7SL108P-201) 68236243-68236539 misc_RNA
ENSG00000244677 (RN7SL706P)
RNA, 7SL, cytoplasmic 706, pseudogene 		ENST00000460079 (RN7SL706P-201) 68149617-68149908 misc_RNA
ENSG00000258477 (PPIAP6)
peptidylprolyl isomerase A (cyclophilin A) pseudogene 6 		ENST00000557078 (PPIAP6-001) 68421698-68422196 processed_pseudogene
ENSG00000258837 (CTD-2566J3.1)
 ENST00000554679 (CTD-2566J3.1-001) 68125004-68130196 antisense
ENSG00000274666 (CTD-2566J3.2)
 ENST00000619934 (CTD-2566J3.2-001) 68113706-68114144 unprocessed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_00083I_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1474 VISTA 10090 12:79205602-79809359
GeneTranscriptPositionBiotype
ENSMUSG00000021123 (Rdh12)
retinol dehydrogenase 12 		ENSMUST00000021548 (Rdh12-001) 79208914-79222665 protein_coding
ENSMUST00000122227 (Rdh12-003) 79208931-79222664 protein_coding
ENSMUST00000140823 (Rdh12-004) 79210661-79212755 protein_coding
ENSMUST00000151980 (Rdh12-002) 79208947-79222664 retained_intron
ENSMUSG00000059060 (Rad51b)
RAD51 homolog B 		ENSMUST00000079533 (Rad51b-201) 79297351-79508656 protein_coding
ENSMUST00000171210 (Rad51b-202) 79297351-79327463 protein_coding
ENSMUSG00000066440 (Zfyve26)
zinc finger, FYVE domain containing 26 		ENSMUST00000021547 (Zfyve26-201) 79232347-79296282 protein_coding

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00083I_0001ENSG00000240210ENST00000473054ENSG00000243546ENST00000481903ENSG00000244677ENST00000460079ENSG00000258477ENST00000557078ENSG00000258837ENST00000554679ENSG00000274666ENST00000619934CIL_00083I_0002ENSMUSG00000021123ENSMUST00000021548ENSMUST00000122227ENSMUST00000140823ENSMUST00000151980ENSMUSG00000059060ENSMUST00000079533ENSMUST00000171210ENSMUSG00000066440ENSMUST00000021547
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00083I_0001ENSG00000240210ENST00000473054ENSG00000243546ENST00000481903ENSG00000244677ENST00000460079ENSG00000258477ENST00000557078ENSG00000258837ENST00000554679ENSG00000274666ENST00000619934CIL_00083I_0002ENSMUSG00000021123ENSMUST00000021548ENSMUST00000122227ENSMUST00000140823ENSMUST00000151980ENSMUSG00000059060ENSMUST00000079533ENSMUST00000171210ENSMUSG00000066440ENSMUST00000021547
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000240210 ENST00000473054 0.082±0.00 0.132±0.00 N/A 0.072±0.00 0.093±0.00 0.064±0.00 0.020±0.00 0.045±0.00 0.059±0.00 0.043±0.00 0.134±0.00 0.029±0.00 N/A 0.119±0.00
ENSG00000243546 ENST00000481903 N/A 0.167±0.00 N/A N/A 0.229±0.00 N/A N/A 0.057±0.00 0.317±0.00 0.053±0.00 N/A 0.267±0.00 N/A N/A
ENSG00000244677 ENST00000460079 N/A N/A N/A N/A 1.801±0.00 N/A N/A N/A 0.729±0.00 N/A N/A N/A N/A N/A
ENSG00000258477 ENST00000557078 N/A 0.064±0.00 N/A N/A 1.124±0.00 0.030±0.00 0.028±0.00 0.159±0.00 0.389±0.00 0.030±0.00 0.055±0.00 0.127±0.00 N/A 0.058±0.00
ENSG00000258837 ENST00000554679 N/A N/A 0.521±0.00 N/A 0.040±0.00 0.597±0.13 N/A 0.162±0.00 N/A N/A N/A 0.092±0.04 N/A 0.050±0.00
ENSG00000274666 ENST00000619934 N/A N/A 0.191±0.00 0.835±0.00 1.003±0.00 0.385±0.00 0.163±0.00 N/A N/A 0.110±0.00 N/A 0.113±0.02 0.134±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021123 ENSMUST00000021548 0.327±0.06 0.065±0.01 2.613±0.52 0.423±0.15 1.029±0.63 0.330±0.17 0.215±0.00 0.217±0.15 0.655±0.64 2.284±1.84 0.124±0.08 0.393±0.21 5.855±2.13 0.135±0.10
ENSMUST00000122227 0.220±0.08 0.073±0.04 N/A N/A N/A 0.297±0.13 0.257±0.09 0.335±0.08 0.066±0.01 N/A 0.105±0.03 0.285±0.19 N/A 0.089±0.00
ENSMUST00000140823 N/A N/A N/A N/A N/A 0.515±0.00 N/A N/A N/A N/A 0.172±0.00 0.271±0.00 N/A 0.159±0.00
ENSMUST00000151980 0.155±0.07 N/A 0.636±0.03 0.093±0.00 0.636±0.22 0.089±0.01 0.081±0.01 0.104±0.07 0.129±0.15 0.592±0.52 0.061±0.02 0.194±0.10 N/A 0.063±0.04
ENSMUSG00000059060 ENSMUST00000079533 N/A N/A 0.057±0.02 0.023±0.00 0.124±0.05 0.079±0.03 0.059±0.02 N/A 0.151±0.07 0.115±0.04 0.032±0.00 0.223±0.05 0.137±0.07 0.259±0.07
ENSMUST00000171210 0.142±0.09 0.239±0.09 N/A 0.218±0.12 0.229±0.15 0.372±0.21 0.092±0.02 0.052±0.00 1.472±0.87 N/A 0.130±0.09 0.805±0.32 1.022±0.41 0.207±0.04
ENSMUSG00000066440 ENSMUST00000021547 4.374±0.74 3.150±0.49 3.065±0.10 1.573±0.69 4.242±2.01 2.711±0.75 1.510±0.27 3.341±0.71 2.729±0.68 4.055±0.34 2.041±0.22 4.438±1.01 7.576±3.71 2.214±0.56

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