C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: choline phosphotransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139109 Chpt1-003 ENSMUSG00000060002 10090 - 10:88472839-88503889 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000139109
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000139109 178.228±94.31 123.134±44.96 12.311±0.18 1.251±0.29 78.077±4.55 7.327±1.37 50.156±4.91 105.607±16.80 13.247±14.93 24.638±5.06 28.918±1.35 16.195±10.47 15.897±10.36 31.283±6.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078K CIL_00078K_0002 CGP 10:88379132-88504073
CIL_0002S4 CIL_0002S4_0002 CGP 10:88452745-88504073

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004142 ISS diacylglycerol cholinephosphotransferase activity
GO:0005794 IDA Golgi apparatus
GO:0006656 ISS phosphatidylcholine biosynthetic process
GO:0006657 IEA CDP-choline pathway
GO:0006663 ISS platelet activating factor biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016780 IDA phosphotransferase activity, for other substituted phosphate groups
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229266 CHPT1-001 protein_coding Homo_sapiens 0 1487
ENST00000266743 SYCP3-002 protein_coding Homo_sapiens 3e-28 130
ENST00000392924 SYCP3-003 protein_coding Homo_sapiens 2e-28 130
ENST00000392927 SYCP3-001 protein_coding Homo_sapiens 3e-28 130
ENST00000478139 SYCP3-004 retained_intron Homo_sapiens 1e-27 130
ENST00000478238 SYCP3-005 retained_intron Homo_sapiens 0 198
ENST00000546490 CHPT1-007 retained_intron Homo_sapiens 0 510
ENST00000546873 CHPT1-009 nonsense_mediated_decay Homo_sapiens 5e-24 115
ENST00000549128 CHPT1-004 nonsense_mediated_decay Homo_sapiens 0 1746
ENST00000549872 CHPT1-002 protein_coding Homo_sapiens 0 1605
ENST00000550385 CHPT1-006 processed_transcript Homo_sapiens 0 348
ENST00000552215 CHPT1-005 nonsense_mediated_decay Homo_sapiens 0 846
ENST00000552329 CHPT1-008 nonsense_mediated_decay Homo_sapiens 0 303
ENST00000552351 CHPT1-003 nonsense_mediated_decay Homo_sapiens 0 761

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