C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: choline phosphotransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020253 Chpt1-001 ENSMUSG00000060002 10090 - 10:88472817-88503970 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000020253
Transcript ID Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000020253 6.108±1.30 0.312±0.00 8.125±0.00 9.204±1.23 27.975±0.74 0.394±0.07 8.315±0.89 11.185±4.94 2.799±1.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078K CIL_00078K_0002 CGP 10:88379132-88504073
CIL_0002S4 CIL_0002S4_0002 CGP 10:88452745-88504073

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004142 ISS diacylglycerol cholinephosphotransferase activity
GO:0005794 IDA Golgi apparatus
GO:0006656 ISS phosphatidylcholine biosynthetic process
GO:0006657 IEA CDP-choline pathway
GO:0006663 ISS platelet activating factor biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016780 IDA phosphotransferase activity, for other substituted phosphate groups
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229266 CHPT1-001 protein_coding Homo_sapiens 0 1509
ENST00000266743 SYCP3-002 protein_coding Homo_sapiens 2.99878e-43 180
ENST00000392924 SYCP3-003 protein_coding Homo_sapiens 9e-38 161
ENST00000392927 SYCP3-001 protein_coding Homo_sapiens 2.99878e-43 180
ENST00000478139 SYCP3-004 retained_intron Homo_sapiens 1.00053e-42 180
ENST00000478238 SYCP3-005 retained_intron Homo_sapiens 0 268
ENST00000546490 CHPT1-007 retained_intron Homo_sapiens 0 510
ENST00000546873 CHPT1-009 nonsense_mediated_decay Homo_sapiens 5e-24 115
ENST00000549128 CHPT1-004 nonsense_mediated_decay Homo_sapiens 0 1633
ENST00000549872 CHPT1-002 protein_coding Homo_sapiens 0 1709
ENST00000550385 CHPT1-006 processed_transcript Homo_sapiens 0 348
ENST00000552215 CHPT1-005 nonsense_mediated_decay Homo_sapiens 0 928
ENST00000552329 CHPT1-008 nonsense_mediated_decay Homo_sapiens 0 303
ENST00000552351 CHPT1-003 nonsense_mediated_decay Homo_sapiens 0 784

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