C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: choline phosphotransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117440 Chpt1-004 ENSMUSG00000060002 10090 - 10:88469514-88504073 protein_coding

Mus musculus EnsemblGRCm38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartLiverMuscleOvaryPlacentaENSMUST00000117440
Transcript ID Bladder Brain Heart Liver Muscle Ovary Placenta
ENSMUST00000117440 3.937±0.86 1.337±1.42 3.756±0.00 0.160±0.03 5.144±0.41 4.782±0.76 1.058±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078K CIL_00078K_0002 CGP 10:88379132-88504073
CIL_0002S4 CIL_0002S4_0002 CGP 10:88452745-88504073

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004142 IEA diacylglycerol cholinephosphotransferase activity
GO:0005794 IDA Golgi apparatus
GO:0006656 IDA phosphatidylcholine biosynthetic process
GO:0006663 IEA platelet activating factor biosynthetic process
GO:0016020 IEA membrane
GO:0016780 IDA phosphotransferase activity, for other substituted phosphate groups

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229266 CHPT1-001 protein_coding Homo_sapiens 0 1718
ENST00000266743 SYCP3-002 protein_coding Homo_sapiens 3e-28 130
ENST00000392924 SYCP3-003 protein_coding Homo_sapiens 2e-28 130
ENST00000392927 SYCP3-001 protein_coding Homo_sapiens 3e-28 130
ENST00000478139 SYCP3-004 retained_intron Homo_sapiens 1e-27 130
ENST00000478238 SYCP3-005 retained_intron Homo_sapiens 0 361
ENST00000546490 CHPT1-007 retained_intron Homo_sapiens 0 510
ENST00000546873 CHPT1-009 nonsense_mediated_decay Homo_sapiens 5e-24 115
ENST00000549128 CHPT1-004 nonsense_mediated_decay Homo_sapiens 0 1513
ENST00000549872 CHPT1-002 protein_coding Homo_sapiens 0 1513
ENST00000550385 CHPT1-006 processed_transcript Homo_sapiens 0 348
ENST00000552215 CHPT1-005 nonsense_mediated_decay Homo_sapiens 0 732
ENST00000552329 CHPT1-008 nonsense_mediated_decay Homo_sapiens 0 303
ENST00000552351 CHPT1-003 nonsense_mediated_decay Homo_sapiens 0 922

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